SMTL ID : 5kri.1

Crystal Structure of the ER-alpha Ligand-binding Domain (Y537S) in Complex with 16b-benzyl 17b-estradiol

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

hetero-2-2-mer

Ligands

2 x 6WM: (8~{R},9~{S},13~{S},14~{S},16~{R},17~{S})-13-methyl-16-(phenylmethyl)-6,7,8,9,11,12,14,15,16,17-decahydrocyclopenta[a]phenanthrene-3,17-diol(Non-covalent)

6WM.1: 14 residues within 4Å: Chain A: M.46, L.49, T.50, A.53, E.56, L.90, M.91, L.94, R.97, M.124, I.127, H.227, L.228, M.231 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:M.46, A:L.49, A:T.50, A:A.53, A:L.90, A:L.94, A:L.94, A:L.228, A:L.228, A:M.231 Hydrogen bonds: A:E.56, A:R.97, A:R.97, A:H.227 Water bridges: A:L.94 pi-Stacking: A:F.107 6WM.2: 9 residues within 4Å: Chain B: M.46, L.49, A.53, E.56, L.90, M.91, L.94, R.97, L.228 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:A.53, B:L.90, B:L.94, B:L.94, B:L.228 Hydrogen bonds: B:L.90, B:R.97 Water bridges: B:R.97 pi-Stacking: B:F.107

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nwachukwu, J.C. et al., Systems Structural Biology Analysis of Ligand Effects on ER alpha Predicts Cellular Response to Environmental Estrogens and Anti-hormone Therapies. Cell Chem Biol (2017)

Release Date

2017-01-18

Peptides

Estrogen receptor: AB
NCOA2: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Estrogen receptor

NCOA2

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