SMTL ID : 5krj.1

Crystal Structure of the ER-alpha Ligand-binding Domain (Y537S) in Complex with an a-naphthyl Substituted OBHS derivative

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

hetero-2-2-mer

Ligands

2 x 6WP: naphthalen-1-yl (1~{S},2~{R},4~{S})-5,6-bis(4-hydroxyphenyl)-7-oxabicyclo[2.2.1]hept-5-ene-2-sulfonate(Non-covalent)

6WP.1: 19 residues within 4Å: Chain A: M.46, L.49, T.50, A.53, E.56, L.90, M.91, L.94, R.97, F.107, V.121, E.122, G.123, M.124, I.127, G.224, H.227, L.228, L.243 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:L.49, A:A.53, A:L.90, A:L.94, A:L.94, A:F.107, A:V.121, A:M.124, A:I.127, A:H.227, A:L.228, A:L.228 Hydrogen bonds: A:L.90, A:R.97 Water bridges: A:L.94 pi-Stacking: A:F.107 6WP.2: 18 residues within 4Å: Chain B: M.46, L.49, T.50, A.53, E.56, L.90, M.91, L.94, R.97, F.107, G.123, M.124, I.127, G.224, H.227, L.228, L.239, L.243 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:L.49, B:A.53, B:L.94, B:L.94, B:F.107, B:M.124, B:I.127, B:H.227, B:L.228 Hydrogen bonds: B:L.90, B:R.97 Water bridges: B:L.94 pi-Stacking: B:F.107

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nwachukwu, J.C. et al., Systems Structural Biology Analysis of Ligand Effects on ER alpha Predicts Cellular Response to Environmental Estrogens and Anti-hormone Therapies. Cell Chem Biol (2017)

Release Date

2017-01-18

Peptides

Estrogen receptor: AB
NCOA2: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Estrogen receptor

NCOA2

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