SMTL ID : 5maj.1

CATHEPSIN L IN COMPLEX WITH 4-[cyclopentyl(imidazo[1,2-a]pyridin-2-ylmethyl)amino]-6-morpholino-1,3,5-triazine-2-carbonitrile

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.00 Å

Oligo State

monomer

Ligands

1 x 7KH: ~{N}-cyclopentyl-~{N}-(imidazo[1,2-a]pyridin-2-ylmethyl)-4-(iminomethyl)-6-morpholin-4-yl-1,3,5-triazin-2-amine(Covalent)

7KH.1: 16 residues within 4Å: Chain A: Q.19, G.23, S.24, C.25, E.63, C.65, N.66, G.67, G.68, L.69, M.70, A.135, M.161, D.162, H.163, G.164 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.69, A:A.135 Hydrogen bonds: A:Q.19, A:C.25, A:H.163 Water bridges: A:C.22

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: D.84, S.88, Y.89, K.99, N.101, Y.104 1 PLIP interactions: 1 interactions with chain A Water bridges: A:N.101

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Giroud, M. et al., Inhibition of the Cysteine Protease Human Cathepsin L by Triazine Nitriles: AmideHeteroarene pi-Stacking Interactions and Chalcogen Bonding in the S3 Pocket. ChemMedChem (2017)

Release Date

2017-01-11

Peptides

Cathepsin L1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cathepsin L1

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