SMTL ID : 5o9s.1 (1 other biounit)

HsNMT1 in complex with CoA and Myristoylated-GKSNSKLK octapeptide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x GLY- LYS- SER- ASN- SER- LYS- LEU- LYS: Neuronal calcium sensor 1(Non-covalent)

GLY-LYS-SER-ASN-SER-LYS-LEU-LYS.1: 27 residues within 4Å: Chain A: Y.86, V.87, E.88, D.89, F.94, F.96, N.152, T.188, A.189, G.190, R.201, Y.202, H.204, S.206, F.217, Y.307, L.309, S.311, G.374, I.375, G.376, D.377, G.378, N.379, L.380, Q.402 Ligands: MYR.5 24 PLIP interactions: 24 interactions with chain A Hydrophobic interactions: A:F.94, A:F.96, A:H.204 Hydrogen bonds: A:Y.86, A:Y.86, A:T.188, A:T.188, A:G.190, A:R.201, A:F.217, A:Y.307, A:S.311, A:S.311, A:I.375, A:D.377, A:D.377, A:D.377, A:D.377, A:G.378, A:G.378, A:N.379, A:Q.402 Water bridges: A:E.88, A:Y.326

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: K.195, V.197, Y.383, L.384, W.387, K.388, C.389 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:K.195, A:K.195, A:V.197, A:L.384, A:L.384, A:C.389, A:C.389 Water bridges: A:W.387 GOL.4: 8 residues within 4Å: Chain A: E.150, P.270, M.272, W.280, F.328, Y.329, V.400, Q.402 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.329, A:V.400, A:Q.402

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 4 residues within 4Å: Chain A: V.38, K.195, P.390, S.391 Ligand excluded by PLIP

1 x MYR: MYRISTIC ACID(Non-covalent)

MYR.5: 16 residues within 4Å: Chain A: W.26, I.151, N.152, F.153, L.154, I.170, I.173, T.174, V.177, F.183, Q.184, A.185, Y.187, T.188, Y.385 Ligands: GLY-LYS-SER-ASN-SER-LYS-LEU-LYS.1 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:W.26, A:I.151, A:I.151, A:I.170, A:I.170, A:I.173, A:T.174, A:V.177, A:A.185, A:Y.187, A:Y.187, A:Y.187, A:Y.187, A:Y.385 Hydrogen bonds: A:F.153, A:L.154

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Castrec, B. et al., Structural and genomic decoding of human and plant myristoylomes reveals a definitive recognition pattern. Nat. Chem. Biol. (2018)

Release Date

2018-06-27

Peptides

Glycylpeptide N-tetradecanoyltransferase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glycylpeptide N-tetradecanoyltransferase 1

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