SMTL ID : 8q24.2 (1 other biounit)

HsNMT1 in complex with both MyrCoA and (DAB)SFSKPR inhibitor peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x DAB- SER- PHE- SER- LYS- PRO- ARG: DAB-SER-PHE-SER-LYS-PRO-ARG(Non-covalent)

DAB-SER-PHE-SER-LYS-PRO-ARG.1: 22 residues within 4Å: Chain A: V.87, E.88, D.89, D.91, F.94, F.96, N.152, T.188, G.190, Y.202, H.204, F.217, S.218, H.219, S.311, I.375, G.376, D.377, G.378, N.379, Q.402 Ligands: MYA.2 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:D.89, A:F.94, A:F.96, A:F.217, A:I.375 Hydrogen bonds: A:D.91, A:N.152, A:G.190, A:I.375, A:D.377, A:D.377, A:D.377, A:G.378, A:G.378, A:N.379 Water bridges: A:Y.86, A:T.188, A:H.204, A:Y.326, A:I.375, A:L.401 Salt bridges: A:H.219

1 x MYA: TETRADECANOYL-COA(Non-covalent)

MYA.2: 34 residues within 4Å: Chain A: R.21, Y.23, Q.24, F.25, W.26, N.85, Y.86, V.87, I.151, N.152, F.153, L.154, C.155, V.156, R.161, S.162, K.163, R.164, V.165, A.166, P.167, I.170, T.174, V.177, H.178, I.182, F.183, Q.184, A.185, Y.187, T.188, L.193, Y.385 Ligands: DAB-SER-PHE-SER-LYS-PRO-ARG.1 32 PLIP interactions: 32 interactions with chain A Hydrophobic interactions: A:Y.86, A:V.87, A:I.151, A:I.151, A:L.154, A:L.154, A:V.156, A:I.170, A:V.177, A:A.185, A:Y.187, A:Y.187, A:Y.187, A:Y.385 Hydrogen bonds: A:Q.24, A:F.25, A:W.26, A:F.153, A:L.154, A:L.154, A:V.156, A:R.161, A:R.161, A:S.162, A:R.164, A:V.165, A:A.166 Water bridges: A:K.163, A:K.163 Salt bridges: A:R.21, A:R.164, A:R.164

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 10 residues within 4Å: Chain A: P.32, K.195, P.196, V.197, Y.383, L.384, W.387, K.388, C.389, S.391 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:P.196, A:L.384, A:L.384, A:C.389, A:C.389 Water bridges: A:K.195 GOL.4: 10 residues within 4Å: Chain A: E.150, P.270, M.272, W.280, F.328, Y.329, L.399, V.400, L.401, Q.402 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.329, A:Q.402, A:Q.402 GOL.5: 5 residues within 4Å: Chain A: K.211, T.318, H.319, K.320, S.321 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.211, A:K.211, A:T.318, A:K.320, A:S.321 Water bridges: A:K.211

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dian, C. et al., HsNMT1 in complex with both MyrCoA and Dab-SFSKPR inhibitor peptide. to be published

Release Date

2024-08-14

Peptides

Glycylpeptide N-tetradecanoyltransferase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Glycylpeptide N-tetradecanoyltransferase 1

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