SMTL ID : 7owr.1 (1 other biounit)

HsNMT1 in complex with both MyrCoA and peptide GGKSFSKPR

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.39 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 9 residues within 4Å: Chain A: P.32, K.195, P.196, V.197, Y.383, L.384, W.387, K.388, C.389 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:P.196, A:L.384, A:L.384, A:C.389, A:C.389 Water bridges: A:K.195

1 x MYA: TETRADECANOYL-COA(Non-covalent)

MYA.2: 33 residues within 4Å: Chain A: S.22, Y.23, Q.24, F.25, W.26, N.85, Y.86, V.87, V.149, I.151, N.152, F.153, L.154, C.155, V.156, R.161, S.162, K.163, R.164, V.165, A.166, P.167, I.170, T.174, V.177, I.182, F.183, Q.184, A.185, Y.187, T.188, L.193, Y.385 33 PLIP interactions: 33 interactions with chain A Hydrophobic interactions: A:W.26, A:W.26, A:Y.86, A:V.87, A:V.149, A:I.151, A:I.151, A:L.154, A:V.156, A:I.170, A:V.177, A:A.185, A:Y.187, A:Y.187, A:Y.187, A:Y.385 Hydrogen bonds: A:Q.24, A:F.25, A:W.26, A:Y.86, A:F.153, A:L.154, A:L.154, A:V.156, A:R.161, A:S.162, A:R.164, A:V.165, A:A.166 Water bridges: A:S.162, A:K.163, A:K.163 Salt bridges: A:R.164

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Riviere, F. et al., Structural and Large-scale Analysis Unveil the Intertwined Paths Promoting NMT-catalyzed Lysine and Glycine Myristoylation. J.Mol.Biol. (2022)

Release Date

2022-12-21

Peptides

Glycylpeptide N-tetradecanoyltransferase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glycylpeptide N-tetradecanoyltransferase 1

Related Entries With Identical Sequence