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SMTL ID : 7owm.1
(1 other biounit)
HsNMT1 in complex with both MyrCoA and HCPA substrate peptide GKQNSKLR
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 1.50 Å
Oligo State
monomer
Ligands
1 x
GLY
-
LYS
-
GLN
-
ASN
-
SER
-
LYS
-
LEU
-
ARG
:
Neuron-specific calcium-binding protein hippocalcin
(Non-covalent)
GLY-LYS-GLN-ASN-SER-LYS-LEU-ARG.1:
29 residues within 4Å:
Chain A:
V.87
,
E.88
,
D.89
,
D.91
,
F.94
,
R.95
,
F.96
,
Y.98
,
N.152
,
T.188
,
A.189
,
G.190
,
Y.202
,
H.204
,
F.217
,
S.218
,
Y.307
,
S.311
,
Y.326
,
G.374
,
I.375
,
G.376
,
D.377
,
G.378
,
N.379
,
L.380
,
L.401
,
Q.402
Ligands:
MYA.3
46
PLIP interactions
:
46 interactions with chain A
Hydrophobic interactions:
A:V.87
,
A:F.94
,
A:F.96
,
A:F.96
,
A:H.204
,
A:F.217
,
A:Y.326
,
A:L.380
Hydrogen bonds:
A:V.87
,
A:D.89
,
A:D.89
,
A:D.91
,
A:F.96
,
A:T.188
,
A:T.188
,
A:T.188
,
A:Y.202
,
A:F.217
,
A:Y.307
,
A:S.311
,
A:I.375
,
A:D.377
,
A:D.377
,
A:D.377
,
A:D.377
,
A:D.377
,
A:L.401
Water bridges:
A:K.13
,
A:Y.86
,
A:E.88
,
A:D.90
,
A:D.90
,
A:N.152
,
A:N.152
,
A:G.190
,
A:G.190
,
A:Y.326
,
A:Y.326
,
A:Y.326
,
A:Y.326
,
A:I.375
,
A:D.377
,
A:G.378
,
A:N.379
,
A:L.401
Salt bridges:
A:H.219
1 x
GOL
:
GLYCEROL
(Non-functional Binders)
GOL.2:
10 residues within 4Å:
Chain A:
P.32
,
K.195
,
P.196
,
V.197
,
Y.383
,
L.384
,
W.387
,
K.388
,
C.389
,
S.391
7
PLIP interactions
:
7 interactions with chain A
Hydrogen bonds:
A:P.196
,
A:L.384
,
A:L.384
,
A:C.389
,
A:C.389
Water bridges:
A:K.195
,
A:S.391
1 x
MYA
:
TETRADECANOYL-COA
(Non-covalent)
MYA.3:
35 residues within 4Å:
Chain A:
R.21
,
Y.23
,
Q.24
,
F.25
,
W.26
,
N.85
,
Y.86
,
V.87
,
I.151
,
N.152
,
F.153
,
L.154
,
C.155
,
V.156
,
R.161
,
S.162
,
K.163
,
R.164
,
V.165
,
A.166
,
P.167
,
I.170
,
T.174
,
V.177
,
H.178
,
I.182
,
F.183
,
Q.184
,
A.185
,
Y.187
,
T.188
,
V.191
,
L.193
,
Y.385
Ligands:
GLY-LYS-GLN-ASN-SER-LYS-LEU-ARG.1
34
PLIP interactions
:
34 interactions with chain A
Hydrophobic interactions:
A:Y.86
,
A:V.87
,
A:I.151
,
A:L.154
,
A:L.154
,
A:V.156
,
A:I.170
,
A:V.177
,
A:A.185
,
A:Y.187
,
A:Y.187
,
A:Y.187
,
A:Y.385
Hydrogen bonds:
A:R.21
,
A:R.21
,
A:Q.24
,
A:F.25
,
A:W.26
,
A:Y.86
,
A:F.153
,
A:L.154
,
A:L.154
,
A:V.156
,
A:R.161
,
A:R.161
,
A:S.162
,
A:R.164
,
A:V.165
,
A:A.166
Water bridges:
A:Q.24
,
A:S.162
,
A:K.163
,
A:K.163
Salt bridges:
A:R.21
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Riviere, F. et al., Structural and Large-scale Analysis Unveil the Intertwined Paths Promoting NMT-catalyzed Lysine and Glycine Myristoylation. J.Mol.Biol. (2022)
Release Date
2022-12-21
Peptides
Glycylpeptide N-tetradecanoyltransferase 1:
A
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
Export Alignment
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Secondary Structure
None
DSSP
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Fade Mismatches
Enhance Mismatches
Chain
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2° Structure
Bfactor
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Glycylpeptide N-tetradecanoyltransferase 1
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|
5o9u.2
|
5o9v.1
|
5o9v.2
|
6qrm.1
|
6qrm.2
|
6sjz.1
|
6sjz.2
|
6sk2.1
|
6sk2.2
|
7owm.2
|
7own.1
|
7own.2
|
7owo.1
|
7owo.2
|
7owp.1
|
7owp.2
|
7owq.1
|
7owq.2
|
7owr.1
|
7owr.2
|
7owu.1
|
7owu.2
|
8q23.1
|
8q23.2
|
8q24.1
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8q24.2
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Tube
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