SMTL ID : 7owo.2 (1 other biounit)

HsNMT1 in complex with both MyrCoA and N-acetylated KSFSKPR peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x ACE- LYS- SER- PHE- SER- LYS- PRO- ARG: N-Acetyl-LYS-SER-PHE-SER-LYS-PRO-ARG(Non-covalent)

ACE-LYS-SER-PHE-SER-LYS-PRO-ARG.1: 23 residues within 4Å: Chain A: V.87, E.88, D.89, D.90, F.94, R.95, F.96, T.188, A.189, G.190, Y.202, H.204, F.217, S.218, S.311, I.375, G.376, D.377, G.378, N.379, L.380, Q.402 Ligands: MYA.2 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:D.89, A:F.94, A:F.96, A:F.96, A:F.96, A:F.217 Hydrogen bonds: A:G.190, A:V.191, A:Y.202, A:I.375, A:D.377, A:D.377, A:G.378, A:N.379 Water bridges: A:N.379 Salt bridges: A:H.219

1 x MYA: TETRADECANOYL-COA(Non-covalent)

MYA.2: 34 residues within 4Å: Chain A: Y.23, Q.24, F.25, W.26, N.85, Y.86, V.87, I.151, N.152, F.153, L.154, C.155, V.156, R.161, S.162, K.163, R.164, V.165, A.166, P.167, I.170, T.174, V.177, H.178, I.182, F.183, Q.184, A.185, Y.187, T.188, L.193, Y.385 Ligands: ACE-LYS-SER-PHE-SER-LYS-PRO-ARG.1, ACE-LYS-SER-PHE-SER-LYS-PRO-ARG.1 29 PLIP interactions: 29 interactions with chain A Hydrophobic interactions: A:Y.86, A:V.87, A:I.151, A:I.151, A:I.151, A:L.154, A:L.154, A:V.156, A:V.177, A:A.185, A:Y.187, A:Y.187, A:Y.187, A:Y.385 Hydrogen bonds: A:Q.24, A:F.25, A:W.26, A:F.153, A:L.154, A:L.154, A:V.156, A:R.161, A:R.161, A:S.162, A:R.164, A:V.165, A:A.166 Water bridges: A:K.163, A:K.163

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 11 residues within 4Å: Chain A: P.32, K.195, P.196, V.197, Y.383, L.384, W.387, K.388, C.389, P.390, S.391 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:K.195, A:K.195, A:L.384, A:L.384, A:C.389, A:C.389 Water bridges: A:K.195

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Riviere, F. et al., Structural and Large-scale Analysis Unveil the Intertwined Paths Promoting NMT-catalyzed Lysine and Glycine Myristoylation. J.Mol.Biol. (2022)

Release Date

2022-12-21

Peptides

Glycylpeptide N-tetradecanoyltransferase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Glycylpeptide N-tetradecanoyltransferase 1

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