SMTL ID : 7own.1 (1 other biounit)

HsNMT1 in complex with both MyrCoA and peptide AKSFSKPR

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x ALA- LYS- SER- PHE- SER- LYS- PRO- ARG: ALA-LYS-SER-PHE-SER-LYS-PRO-ARG(Non-covalent)

ALA-LYS-SER-PHE-SER-LYS-PRO-ARG.1: 29 residues within 4Å: Chain A: V.87, E.88, D.89, D.91, M.93, F.94, R.95, F.96, Y.98, N.152, T.188, G.190, Y.202, H.204, K.216, F.217, S.218, H.219, Y.307, L.309, S.311, I.375, G.376, D.377, N.379, L.380, L.401, Q.402 Ligands: MYA.4 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:D.89, A:F.94, A:F.96, A:F.96, A:L.309, A:L.380 Hydrogen bonds: A:D.91, A:D.91, A:Y.98, A:Y.98, A:N.152, A:N.152, A:Y.202, A:Y.307, A:Y.307, A:I.375, A:D.377, A:D.377, A:N.379 Water bridges: A:K.13, A:G.190, A:Y.326, A:Y.326

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 10 residues within 4Å: Chain A: P.32, K.195, P.196, V.197, Y.383, L.384, W.387, K.388, C.389, S.391 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:P.196, A:L.384, A:L.384, A:C.389, A:C.389 Water bridges: A:K.195, A:S.391 GOL.3: 5 residues within 4Å: Chain A: K.211, T.318, H.319, K.320, S.321 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.211, A:T.318, A:H.319, A:K.320, A:S.321

1 x MYA: TETRADECANOYL-COA(Non-covalent)

MYA.4: 33 residues within 4Å: Chain A: R.21, Y.23, Q.24, F.25, W.26, N.85, Y.86, V.87, I.151, N.152, F.153, L.154, C.155, V.156, R.161, S.162, K.163, R.164, V.165, A.166, P.167, I.170, T.174, V.177, H.178, I.182, F.183, A.185, Y.187, T.188, L.193, Y.385 Ligands: ALA-LYS-SER-PHE-SER-LYS-PRO-ARG.1 31 PLIP interactions: 31 interactions with chain A Hydrophobic interactions: A:Y.86, A:V.87, A:I.151, A:I.151, A:L.154, A:V.156, A:A.166, A:I.170, A:V.177, A:A.185, A:Y.187, A:Y.187, A:Y.385 Hydrogen bonds: A:R.21, A:Q.24, A:F.25, A:W.26, A:Y.86, A:F.153, A:L.154, A:L.154, A:V.156, A:R.161, A:R.161, A:S.162, A:R.164, A:V.165, A:A.166 Water bridges: A:K.163, A:K.163 Salt bridges: A:R.21

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Riviere, F. et al., Structural and Large-scale Analysis Unveil the Intertwined Paths Promoting NMT-catalyzed Lysine and Glycine Myristoylation. J.Mol.Biol. (2022)

Release Date

2022-12-21

Peptides

Glycylpeptide N-tetradecanoyltransferase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glycylpeptide N-tetradecanoyltransferase 1

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