SMTL ID : 7owm.2 (1 other biounit)

HsNMT1 in complex with both MyrCoA and HCPA substrate peptide GKQNSKLR

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x MYA: TETRADECANOYL-COA(Non-covalent)

MYA.1: 32 residues within 4Å: Chain A: Y.23, Q.24, F.25, W.26, N.85, Y.86, V.87, I.151, N.152, F.153, L.154, C.155, V.156, R.161, S.162, K.163, R.164, V.165, A.166, P.167, I.170, T.174, V.177, H.178, I.182, F.183, Q.184, A.185, Y.187, T.188, L.193, Y.385 28 PLIP interactions: 28 interactions with chain A Hydrophobic interactions: A:Y.86, A:V.87, A:I.151, A:I.151, A:L.154, A:V.156, A:V.177, A:A.185, A:Y.187, A:Y.187, A:Y.187, A:Y.385 Hydrogen bonds: A:Q.24, A:F.25, A:W.26, A:F.153, A:L.154, A:L.154, A:V.156, A:R.161, A:R.161, A:S.162, A:R.164, A:V.165, A:A.166 Water bridges: A:Q.24, A:K.163, A:K.163

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 11 residues within 4Å: Chain A: P.32, K.195, P.196, V.197, Y.383, L.384, W.387, K.388, C.389, P.390, S.391 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:P.196, A:L.384, A:L.384, A:C.389, A:C.389 Water bridges: A:K.195, A:S.391 GOL.3: 6 residues within 4Å: Chain A: Y.98, Y.202, Y.307, L.309, L.401, Q.402 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.98, A:Y.307 Water bridges: A:N.152, A:Y.307, A:L.401 GOL.4: 11 residues within 4Å: Chain A: A.137, E.150, P.270, M.272, W.280, F.328, Y.329, L.399, V.400, L.401, Q.402 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.329, A:V.400, A:Q.402 Water bridges: A:E.150

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Riviere, F. et al., Structural and Large-scale Analysis Unveil the Intertwined Paths Promoting NMT-catalyzed Lysine and Glycine Myristoylation. J.Mol.Biol. (2022)

Release Date

2022-12-21

Peptides

Glycylpeptide N-tetradecanoyltransferase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Glycylpeptide N-tetradecanoyltransferase 1

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