SMTL ID : 5sws.1

Crystal Structure of NP2-B17 TCR-H2Db-NP complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.86 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x ALA- SER- ASN- GLU- ASN- MET- GLU- THR- MET: influenza NP366 epitope(Non-covalent)

ALA-SER-ASN-GLU-ASN-MET-GLU-THR-MET.1: 29 residues within 4Å: Chain A: M.5, Y.7, Y.45, E.63, K.66, Q.70, W.73, S.77, N.80, L.81, Y.84, L.95, Q.97, F.116, Y.123, T.143, K.146, W.147, S.150, H.155, Y.156, Y.159, W.167, Y.171 Chain D: K.52, I.53, L.54, N.55, R.56 29 PLIP interactions: 23 interactions with chain A, 6 interactions with chain D Hydrophobic interactions: A:K.66, A:W.73, A:L.81, A:Y.159, A:W.167, D:I.53, D:L.54 Hydrogen bonds: A:Y.7, A:Y.45, A:Y.45, A:E.63, A:K.66, A:K.66, A:Q.70, A:Q.70, A:S.77, A:N.80, A:Q.97, A:Q.97, A:S.150, A:Y.156, A:Y.171, A:Y.171, D:L.54, D:R.56 Salt bridges: A:K.146, A:K.146, D:K.52, D:R.56

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gras, S. et al., Reversed T Cell Receptor Docking on a Major Histocompatibility Class I Complex Limits Involvement in the Immune Response. Immunity (2016)

Release Date

2016-10-05

Peptides

H-2 class I histocompatibility antigen, D-B alpha chain: A
Beta-2-microglobulin: B
NP1-B17 TCR alpha chain: C
NP1-B17 TCR beta chain: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
D

D
E

H-2 class I histocompatibility antigen, D-B alpha chain

Beta-2-microglobulin

NP1-B17 TCR alpha chain

NP1-B17 TCR beta chain

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