SMTL ID : 5tg2.1

1.75 A resolution structure of Norovirus 3CL protease in complex with the a n-pentyl substituted macrocyclic inhibitor (17-mer)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

1 x V69: (4S,7S,17R)-7-(hydroxymethyl)-4-(2-methylpropyl)-17-pentyl-1-oxa-3,6,11-triazacycloheptadecane-2,5,10-trione(Covalent)

V69.1: 11 residues within 4Å: Chain A: H.37, I.116, Q.117, C.146, H.164, A.165, A.166, A.167, T.168, T.173, V.175 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:I.116, A:A.166, A:A.167, A:T.173, A:V.175 Hydrogen bonds: A:Q.117, A:A.165, A:A.167, A:A.167 Water bridges: A:C.146

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Damalanka, V.C. et al., Design, synthesis, and evaluation of a novel series of macrocyclic inhibitors of norovirus 3CL protease. Eur J Med Chem (2016)

Release Date

2017-01-11

Peptides

3C-LIKE PROTEASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

3C-LIKE PROTEASE

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