SMTL ID : 5two.1

Peroxisome proliferator-activated receptor gamma ligand binding domain in complex with a novel selectively PPAR gamma-modulating ligand VSP-51

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.93 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 7MV: N-benzyl-1-[(4-chloro-3-fluorophenyl)methyl]-1H-indole-5-carboxamide(Non-covalent)

7MV.1: 20 residues within 4Å: Chain A: I.57, I.76, F.77, G.79, C.80, Q.81, R.83, S.84, H.118, I.121, Y.122, L.125, V.134, I.136, F.158, M.159, H.244, L.260, L.264, Y.268 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:F.77, A:F.77, A:Q.81, A:R.83, A:I.121, A:V.134, A:I.136, A:F.158, A:F.158, A:L.260, A:L.264, A:Y.268 Hydrogen bonds: A:S.84, A:S.84, A:Y.122

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yi, W. et al., Identification of a novel selective PPAR gamma ligand with a unique binding mode and improved therapeutic profile in vitro. Sci Rep (2017)

Release Date

2017-02-08

Peptides

Peroxisome proliferator-activated receptor gamma: A
PRO-SER-LEU-LEU-LYS-LYS-LEU-LEU-LEU-ALA-PRO: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peroxisome proliferator-activated receptor gamma

PRO-SER-LEU-LEU-LYS-LYS-LEU-LEU-LEU-ALA-PRO

Related Entries With Identical Sequence