SMTL ID : 5u5h.1

Crystal structure of EED in complex with 6-(2-fluoro-5-methoxybenzyl)-1-isopropyl-5,6,7,8-tetrahydroimidazo[1,5-a]pyridin-3-amine 6-(2-fluoro-5-methoxybenzyl)-1-isopropyl-5,6,7,8-tetrahydroimidazo[1,5-a]pyridin-3-amine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x 7VV: (6S)-6-[(2-fluoro-5-methoxyphenyl)methyl]-1-(propan-2-yl)-5,6,7,8-tetrahydroimidazo[1,5-a]pyridin-3-amine(Non-covalent)

7VV.1: 12 residues within 4Å: Chain A: F.23, Y.74, N.120, E.164, L.166, M.182, D.236, Y.291, M.292, R.293, R.340, Q.341 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:F.23, A:F.23, A:Y.74, A:Y.74, A:Y.74, A:D.236, A:Y.291, A:Y.291 Hydrogen bonds: A:Y.291 Water bridges: A:Y.74, A:N.120 Salt bridges: A:E.164 pi-Stacking: A:Y.291 pi-Cation interactions: A:Y.291, A:R.293

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: D.81, S.82, N.83, L.88, K.110, N.130, I.146, Q.147 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.82, A:N.130, A:N.130

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lingel, A. et al., Structure-Guided Design of EED Binders Allosterically Inhibiting the Epigenetic Polycomb Repressive Complex 2 (PRC2) Methyltransferase. J. Med. Chem. (2017)

Release Date

2017-01-11

Peptides

Polycomb protein EED: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Polycomb protein EED

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