SMTL ID : 6acu.3 (3 other biounits)

The structure of CVA10 virus mature virion

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-6-6-6-6-mer

Ligands

6 x SPH: SPHINGOSINE(Non-covalent)

SPH.1: 15 residues within 4Å: Chain A: I.110, D.111, I.112, F.134, F.136, Y.152, Y.154, V.178, V.191, Y.200, W.202, N.227, M.229, F.232, M.252 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:I.110, A:F.134, A:F.134, A:F.136, A:Y.154, A:Y.154, A:Y.154, A:V.178, A:V.191, A:Y.200, A:M.229, A:F.232 Hydrogen bonds: A:D.111, A:D.111, A:I.112, A:N.227, A:N.227 SPH.2: 15 residues within 4Å: Chain E: I.110, D.111, I.112, F.134, F.136, Y.152, Y.154, V.178, V.191, Y.200, W.202, N.227, M.229, F.232, M.252 17 PLIP interactions: 17 interactions with chain E Hydrophobic interactions: E:I.110, E:F.134, E:F.134, E:F.136, E:Y.154, E:Y.154, E:Y.154, E:V.178, E:V.191, E:Y.200, E:M.229, E:F.232 Hydrogen bonds: E:D.111, E:D.111, E:I.112, E:N.227, E:N.227 SPH.3: 15 residues within 4Å: Chain I: I.110, D.111, I.112, F.134, F.136, Y.152, Y.154, V.178, V.191, Y.200, W.202, N.227, M.229, F.232, M.252 17 PLIP interactions: 17 interactions with chain I Hydrophobic interactions: I:I.110, I:F.134, I:F.134, I:F.136, I:Y.154, I:Y.154, I:Y.154, I:V.178, I:V.191, I:Y.200, I:M.229, I:F.232 Hydrogen bonds: I:D.111, I:D.111, I:I.112, I:N.227, I:N.227 SPH.4: 15 residues within 4Å: Chain M: I.110, D.111, I.112, F.134, F.136, Y.152, Y.154, V.178, V.191, Y.200, W.202, N.227, M.229, F.232, M.252 17 PLIP interactions: 17 interactions with chain M Hydrophobic interactions: M:I.110, M:F.134, M:F.134, M:F.136, M:Y.154, M:Y.154, M:Y.154, M:V.178, M:V.191, M:Y.200, M:M.229, M:F.232 Hydrogen bonds: M:D.111, M:D.111, M:I.112, M:N.227, M:N.227 SPH.5: 15 residues within 4Å: Chain Q: I.110, D.111, I.112, F.134, F.136, Y.152, Y.154, V.178, V.191, Y.200, W.202, N.227, M.229, F.232, M.252 17 PLIP interactions: 17 interactions with chain Q Hydrophobic interactions: Q:I.110, Q:F.134, Q:F.134, Q:F.136, Q:Y.154, Q:Y.154, Q:Y.154, Q:V.178, Q:V.191, Q:Y.200, Q:M.229, Q:F.232 Hydrogen bonds: Q:D.111, Q:D.111, Q:I.112, Q:N.227, Q:N.227 SPH.6: 15 residues within 4Å: Chain U: I.110, D.111, I.112, F.134, F.136, Y.152, Y.154, V.178, V.191, Y.200, W.202, N.227, M.229, F.232, M.252 17 PLIP interactions: 17 interactions with chain U Hydrophobic interactions: U:I.110, U:F.134, U:F.134, U:F.136, U:Y.154, U:Y.154, U:Y.154, U:V.178, U:V.191, U:Y.200, U:M.229, U:F.232 Hydrogen bonds: U:D.111, U:D.111, U:I.112, U:N.227, U:N.227

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, R. et al., Discovery and structural characterization of a therapeutic antibody against coxsackievirus A10. Sci Adv (2018)

Release Date

2018-11-21

Peptides

VP1: AEIMQU
VP2: BFJNRV
VP3: CGKOSW
VP4: DHLPTX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
A

I
A

M
A

Q
A

U
A

B
B

F
B

J
B

N
B

R
B

V
B

C
C

G
C

K
C

O
C

S
C

W
C

D
D

H
D

L
D

P
D

T
D

X
D

VP1

VP2

VP3

VP4

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