SMTL ID : 6aks.3 (3 other biounits)

Cryo-EM structure of CVA10 mature virus

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-6-6-6-6-mer

Ligands

6 x SPH: SPHINGOSINE(Non-covalent)

SPH.1: 14 residues within 4Å: Chain A: I.110, D.111, I.112, M.113, F.134, Y.152, Y.154, V.178, V.191, M.194, Y.200, W.202, N.227, M.229 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:F.134, A:F.134, A:Y.154, A:Y.154, A:V.178, A:V.191, A:V.191, A:W.202, A:M.229 Hydrogen bonds: A:D.111, A:D.111, A:I.112 SPH.2: 14 residues within 4Å: Chain E: I.110, D.111, I.112, M.113, F.134, Y.152, Y.154, V.178, V.191, M.194, Y.200, W.202, N.227, M.229 12 PLIP interactions: 12 interactions with chain E Hydrophobic interactions: E:F.134, E:F.134, E:Y.154, E:Y.154, E:V.178, E:V.191, E:V.191, E:W.202, E:M.229 Hydrogen bonds: E:D.111, E:D.111, E:I.112 SPH.3: 14 residues within 4Å: Chain I: I.110, D.111, I.112, M.113, F.134, Y.152, Y.154, V.178, V.191, M.194, Y.200, W.202, N.227, M.229 11 PLIP interactions: 11 interactions with chain I Hydrophobic interactions: I:F.134, I:F.134, I:Y.154, I:Y.154, I:V.178, I:V.191, I:V.191, I:W.202, I:M.229 Hydrogen bonds: I:D.111, I:I.112 SPH.4: 14 residues within 4Å: Chain M: I.110, D.111, I.112, M.113, F.134, Y.152, Y.154, V.178, V.191, M.194, Y.200, W.202, N.227, M.229 12 PLIP interactions: 12 interactions with chain M Hydrophobic interactions: M:F.134, M:F.134, M:Y.154, M:Y.154, M:V.178, M:V.191, M:V.191, M:W.202, M:M.229 Hydrogen bonds: M:D.111, M:D.111, M:I.112 SPH.5: 14 residues within 4Å: Chain Q: I.110, D.111, I.112, M.113, F.134, Y.152, Y.154, V.178, V.191, M.194, Y.200, W.202, N.227, M.229 12 PLIP interactions: 12 interactions with chain Q Hydrophobic interactions: Q:F.134, Q:F.134, Q:Y.154, Q:Y.154, Q:V.178, Q:V.191, Q:V.191, Q:W.202, Q:M.229 Hydrogen bonds: Q:D.111, Q:D.111, Q:I.112 SPH.6: 14 residues within 4Å: Chain U: I.110, D.111, I.112, M.113, F.134, Y.152, Y.154, V.178, V.191, M.194, Y.200, W.202, N.227, M.229 12 PLIP interactions: 12 interactions with chain U Hydrophobic interactions: U:F.134, U:F.134, U:Y.154, U:Y.154, U:V.178, U:V.191, U:V.191, U:W.202, U:M.229 Hydrogen bonds: U:D.111, U:D.111, U:I.112

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, L. et al., Structures of Coxsackievirus A10 unveil the molecular mechanisms of receptor binding and viral uncoating. Nat Commun (2018)

Release Date

2019-01-16

Peptides

VP1: AEIMQU
VP2: BFJNRV
VP3: CGKOSW
VP4: DHLPTX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
A

I
A

M
A

Q
A

U
A

B
B

F
B

J
B

N
B

R
B

V
B

C
C

G
C

K
C

O
C

S
C

W
C

D
D

H
D

L
D

P
D

T
D

X
D

VP1

VP2

VP3

VP4

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