SMTL ID : 7bzt.4 (3 other biounits)

Cryo-EM structure of mature Coxsackievirus A10 in complex with KRM1 at pH 7.4

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x SPH: SPHINGOSINE(Non-covalent)

SPH.1: 13 residues within 4Å: Chain A: I.110, D.111, I.112, M.113, F.134, F.136, Y.154, V.191, Y.200, W.202, N.227, M.229, F.232 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:I.110, A:I.112, A:F.134, A:F.136, A:Y.154, A:Y.154, A:Y.154, A:V.191, A:V.191, A:M.229, A:F.232, A:F.232 Hydrogen bonds: A:I.110, A:I.112, A:N.227

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 3 residues within 4Å: Chain E: N.25, W.26, N.62 3 PLIP interactions: 3 interactions with chain E Hydrogen bonds: E:N.25, E:W.26, E:N.62 NAG.3: 3 residues within 4Å: Chain E: N.39, E.40, E.60 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:E.40, E:E.40 NAG.4: 5 residues within 4Å: Chain E: H.231, H.233, S.271, F.272, N.273 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:N.273, E:N.273

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cui, Y. et al., Molecular basis of Coxsackievirus A10 entry using the two-in-one attachment and uncoating receptor KRM1. Proc.Natl.Acad.Sci.USA (2020)

Release Date

2020-07-22

Peptides

Capsid protein VP1: A
Capsid protein VP2: B
Capsid protein VP3: C
Capsid protein VP4: D
KRM1: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

Capsid protein VP1

Capsid protein VP2

Capsid protein VP3

Capsid protein VP4

KRM1

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