- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-5-5-5-5-5-mer
- Ligands
- 5 x SPH: SPHINGOSINE(Non-covalent)
- 15 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.2: 3 residues within 4Å:- Chain E: N.25, W.26, N.62
3 PLIP interactions:3 interactions with chain E- Hydrogen bonds: E:N.25, E:W.26, E:N.62
NAG.3: 3 residues within 4Å:- Chain E: N.39, E.40, E.60
2 PLIP interactions:2 interactions with chain E- Hydrogen bonds: E:E.40, E:E.40
NAG.4: 5 residues within 4Å:- Chain E: H.231, H.233, S.271, F.272, N.273
2 PLIP interactions:2 interactions with chain E- Hydrogen bonds: E:N.273, E:N.273
NAG.6: 3 residues within 4Å:- Chain J: N.25, W.26, N.62
3 PLIP interactions:3 interactions with chain J- Hydrogen bonds: J:N.25, J:W.26, J:N.62
NAG.7: 3 residues within 4Å:- Chain J: N.39, E.40, E.60
2 PLIP interactions:2 interactions with chain J- Hydrogen bonds: J:E.40, J:E.40
NAG.8: 5 residues within 4Å:- Chain J: H.231, H.233, S.271, F.272, N.273
2 PLIP interactions:2 interactions with chain J- Hydrogen bonds: J:N.273, J:N.273
NAG.10: 3 residues within 4Å:- Chain O: N.25, W.26, N.62
3 PLIP interactions:3 interactions with chain O- Hydrogen bonds: O:N.25, O:W.26, O:N.62
NAG.11: 3 residues within 4Å:- Chain O: N.39, E.40, E.60
1 PLIP interactions:1 interactions with chain O- Hydrogen bonds: O:E.40
NAG.12: 5 residues within 4Å:- Chain O: H.231, H.233, S.271, F.272, N.273
2 PLIP interactions:2 interactions with chain O- Hydrogen bonds: O:N.273, O:N.273
NAG.14: 3 residues within 4Å:- Chain T: N.25, W.26, N.62
3 PLIP interactions:3 interactions with chain T- Hydrogen bonds: T:N.25, T:W.26, T:N.62
NAG.15: 3 residues within 4Å:- Chain T: N.39, E.40, E.60
1 PLIP interactions:1 interactions with chain T- Hydrogen bonds: T:E.40
NAG.16: 5 residues within 4Å:- Chain T: H.231, H.233, S.271, F.272, N.273
2 PLIP interactions:2 interactions with chain T- Hydrogen bonds: T:N.273, T:N.273
NAG.18: 3 residues within 4Å:- Chain Y: N.25, W.26, N.62
3 PLIP interactions:3 interactions with chain Y- Hydrogen bonds: Y:N.25, Y:W.26, Y:N.62
NAG.19: 3 residues within 4Å:- Chain Y: N.39, E.40, E.60
2 PLIP interactions:2 interactions with chain Y- Hydrogen bonds: Y:E.40, Y:E.40
NAG.20: 5 residues within 4Å:- Chain Y: H.231, H.233, S.271, F.272, N.273
2 PLIP interactions:2 interactions with chain Y- Hydrogen bonds: Y:N.273, Y:N.273
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Cui, Y. et al., Molecular basis of Coxsackievirus A10 entry using the two-in-one attachment and uncoating receptor KRM1. Proc.Natl.Acad.Sci.USA (2020)
- Release Date
- 2020-07-22
- Peptides
- Capsid protein VP1: AFKPU
Capsid protein VP2: BGLQV
Capsid protein VP3: CHMRW
Capsid protein VP4: DINSX
KRM1: EJOTY - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AF
AK
AP
AU
AB
BG
BL
BQ
BV
BC
CH
CM
CR
CW
CD
DI
DN
DS
DX
DE
EJ
EO
ET
EY
E
SMTL ID : 7bzt.2 (3 other biounits)
Cryo-EM structure of mature Coxsackievirus A10 in complex with KRM1 at pH 7.4
Capsid protein VP1
Toggle Identical (AFKPU)Capsid protein VP2
Toggle Identical (BGLQV)Capsid protein VP3
Toggle Identical (CHMRW)Capsid protein VP4
Toggle Identical (DINSX)KRM1
Toggle Identical (EJOTY)Related Entries With Identical Sequence
6acu.1 | 6acu.2 | 6acu.3 | 6acu.4 | 6ad0.1 | 6ad0.2 | 6ad0.3 | 6ad0.4 | 6aks.1 | 6aks.2 | 6aks.3 | 6aks.4 | 6akt.1 | 6akt.2 | 6akt.3 | 6akt.4 | 6aku.1 | 6aku.2 | 6aku.3 | 6aku.4 | 6iij.1 | 6iij.2 | 6iij.3 | 6iij.4 | 6iio.1 | 6iio.2 | 6iio.3 | 6iio.4 | 7bzn.1 | 7bzn.2 more...less...7bzn.3 | 7bzn.4 | 7bzo.1 | 7bzo.2 | 7bzo.3 | 7bzo.4 | 7bzt.1 | 7bzt.3 | 7bzt.4 | 7bzu.1 | 7bzu.2 | 7bzu.3 | 7bzu.4 | 7c4t.1 | 7c4t.2 | 7c4t.3 | 7c4t.4 | 7c4w.1 | 7c4w.2 | 7c4w.3 | 7c4w.4 | 7c4y.1 | 7c4y.2 | 7c4y.3 | 7c4y.4 | 7c4z.1 | 7c4z.2 | 7c4z.3 | 7c4z.4 | 8bqn.1 | 8bqn.2 | 8bqn.3 | 8bqn.4 | 8f7y.1