SMTL ID : 6ad0.3 (3 other biounits)

The structure of CVA10 mature virion in complex with Fab 2G8

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-6-6-6-6-6-6-mer

Ligands

6 x SPH: SPHINGOSINE(Non-covalent)

SPH.1: 11 residues within 4Å: Chain C: I.110, I.112, F.134, Y.154, V.178, V.191, Y.200, W.202, N.227, M.229, F.232 11 PLIP interactions: 11 interactions with chain C Hydrophobic interactions: C:F.134, C:F.134, C:Y.154, C:Y.154, C:V.178, C:V.191, C:V.191, C:Y.200, C:F.232, C:F.232 Hydrogen bonds: C:I.112 SPH.2: 11 residues within 4Å: Chain I: I.110, I.112, F.134, Y.154, V.178, V.191, Y.200, W.202, N.227, M.229, F.232 11 PLIP interactions: 11 interactions with chain I Hydrophobic interactions: I:F.134, I:F.134, I:Y.154, I:Y.154, I:V.178, I:V.191, I:V.191, I:Y.200, I:F.232, I:F.232 Hydrogen bonds: I:I.112 SPH.3: 11 residues within 4Å: Chain O: I.110, I.112, F.134, Y.154, V.178, V.191, Y.200, W.202, N.227, M.229, F.232 11 PLIP interactions: 11 interactions with chain O Hydrophobic interactions: O:F.134, O:F.134, O:Y.154, O:Y.154, O:V.178, O:V.191, O:V.191, O:Y.200, O:F.232, O:F.232 Hydrogen bonds: O:I.112 SPH.4: 11 residues within 4Å: Chain U: I.110, I.112, F.134, Y.154, V.178, V.191, Y.200, W.202, N.227, M.229, F.232 11 PLIP interactions: 11 interactions with chain U Hydrophobic interactions: U:F.134, U:F.134, U:Y.154, U:Y.154, U:V.178, U:V.191, U:V.191, U:Y.200, U:F.232, U:F.232 Hydrogen bonds: U:I.112 SPH.5: 11 residues within 4Å: Chain 0: I.110, I.112, F.134, Y.154, V.178, V.191, Y.200, W.202, N.227, M.229, F.232 11 PLIP interactions: 11 interactions with chain 0 Hydrophobic interactions: 0:F.134, 0:F.134, 0:Y.154, 0:Y.154, 0:V.178, 0:V.191, 0:V.191, 0:Y.200, 0:F.232, 0:F.232 Hydrogen bonds: 0:I.112 SPH.6: 11 residues within 4Å: Chain 6: I.110, I.112, F.134, Y.154, V.178, V.191, Y.200, W.202, N.227, M.229, F.232 11 PLIP interactions: 11 interactions with chain 6 Hydrophobic interactions: 6:F.134, 6:F.134, 6:Y.154, 6:Y.154, 6:V.178, 6:V.191, 6:V.191, 6:Y.200, 6:F.232, 6:F.232 Hydrogen bonds: 6:I.112

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, R. et al., Discovery and structural characterization of a therapeutic antibody against coxsackievirus A10. Sci Adv (2018)

Release Date

2018-11-21

Peptides

VL of Fab 2G8: AGMSY4
VH of Fab 2G8: BHNTZ5
VP1: CIOU06
VP2: DJPV17
VP3: EKQW28
VP4: FLRX39

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

G
L

M
L

S
L

Y
L

4
L

B
H

H
H

N
H

T
H

Z
H

5
H

C
A

I
A

O
A

U
A

0
A

6
A

D
B

J
B

P
B

V
B

1
B

7
B

E
C

K
C

Q
C

W
C

2
C

8
C

F
D

L
D

R
D

X
D

3
D

9
D

VL of Fab 2G8

VH of Fab 2G8

VP1

VP2

VP3

VP4

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