SMTL ID : 6iij.2 (3 other biounits)

Cryo-EM structure of CV-A10 mature virion

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-5-5-5-5-mer

Ligands

5 x SPH: SPHINGOSINE(Non-covalent)

SPH.1: 14 residues within 4Å: Chain A: I.109, D.110, I.111, M.112, F.133, Y.153, V.190, M.193, Y.199, W.201, N.226, M.228, F.231, N.273 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:I.109, A:F.133, A:Y.153, A:Y.153, A:Y.153, A:V.190, A:V.190, A:Y.199, A:W.201, A:W.201, A:N.226, A:M.228, A:F.231 Hydrogen bonds: A:I.109, A:D.110, A:I.111, A:M.112 SPH.2: 14 residues within 4Å: Chain E: I.109, D.110, I.111, M.112, F.133, Y.153, V.190, M.193, Y.199, W.201, N.226, M.228, F.231, N.273 17 PLIP interactions: 17 interactions with chain E Hydrophobic interactions: E:I.109, E:F.133, E:Y.153, E:Y.153, E:Y.153, E:V.190, E:V.190, E:Y.199, E:W.201, E:W.201, E:N.226, E:M.228, E:F.231 Hydrogen bonds: E:I.109, E:D.110, E:I.111, E:M.112 SPH.3: 14 residues within 4Å: Chain I: I.109, D.110, I.111, M.112, F.133, Y.153, V.190, M.193, Y.199, W.201, N.226, M.228, F.231, N.273 17 PLIP interactions: 17 interactions with chain I Hydrophobic interactions: I:I.109, I:F.133, I:Y.153, I:Y.153, I:Y.153, I:V.190, I:V.190, I:Y.199, I:W.201, I:W.201, I:N.226, I:M.228, I:F.231 Hydrogen bonds: I:I.109, I:D.110, I:I.111, I:M.112 SPH.4: 14 residues within 4Å: Chain M: I.109, D.110, I.111, M.112, F.133, Y.153, V.190, M.193, Y.199, W.201, N.226, M.228, F.231, N.273 17 PLIP interactions: 17 interactions with chain M Hydrophobic interactions: M:I.109, M:F.133, M:Y.153, M:Y.153, M:Y.153, M:V.190, M:V.190, M:Y.199, M:W.201, M:W.201, M:N.226, M:M.228, M:F.231 Hydrogen bonds: M:I.109, M:D.110, M:I.111, M:M.112 SPH.5: 14 residues within 4Å: Chain Q: I.109, D.110, I.111, M.112, F.133, Y.153, V.190, M.193, Y.199, W.201, N.226, M.228, F.231, N.273 17 PLIP interactions: 17 interactions with chain Q Hydrophobic interactions: Q:I.109, Q:F.133, Q:Y.153, Q:Y.153, Q:Y.153, Q:V.190, Q:V.190, Q:Y.199, Q:W.201, Q:W.201, Q:N.226, Q:M.228, Q:F.231 Hydrogen bonds: Q:I.109, Q:D.110, Q:I.111, Q:M.112

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, J. et al., Coxsackievirus A10 atomic structure facilitating the discovery of a broad-spectrum inhibitor against human enteroviruses. Cell Discov (2019)

Release Date

2018-11-07

Peptides

VP1: AEIMQ
VP2: BFJNR
VP3: CGKOS
VP4: DHLPT

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
A

I
A

M
A

Q
A

B
B

F
B

J
B

N
B

R
B

C
C

G
C

K
C

O
C

S
C

D
D

H
D

L
D

P
D

T
D

VP1

VP2

VP3

VP4

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