SMTL ID : 6dgo.1

Crystal Structure of Human PPARgamma Ligand Binding Domain in Complex with Troglitazone

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

homo-dimer

Ligands

1 x GD4: (5S)-5-[(4-{[(2R)-6-hydroxy-2,5,7,8-tetramethyl-3,4-dihydro-2H-1-benzopyran-2-yl]methoxy}phenyl)methyl]-1,3-thiazolidine-2,4-dione(Non-covalent)

GD4.1: 18 residues within 4Å: Chain A: H.64, I.79, C.83, R.86, S.87, H.121, Y.125, L.128, V.137, L.138, I.139, S.140, M.146, M.162, H.247, L.251, L.267, Y.271 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:R.86, A:Y.125, A:L.128, A:V.137, A:I.139, A:I.139 Hydrogen bonds: A:S.87, A:H.121, A:S.140, A:Y.271

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shang, J. et al., Quantitative structural assessment of graded receptor agonism. Proc.Natl.Acad.Sci.USA (2019)

Release Date

2019-05-22

Peptides

Peroxisome proliferator-activated receptor gamma: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peroxisome proliferator-activated receptor gamma

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