SMTL ID : 6ezp.1

CATHEPSIN L IN COMPLEX WITH (3S,14E)-19-chloro-N-(1-cyanocyclopropyl)-5-oxo-12,17-dioxa-4-azatricyclo[16.2.2.06,11]docosa-1(21),6(11),7,9,14,18(22),19-heptaene-3-carboxamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.37 Å

Oligo State

monomer

Ligands

1 x C3E: (3~{S},14~{E})-19-chloranyl-~{N}-(1-cyanocyclopropyl)-5-oxidanylidene-12,17-dioxa-4-azatricyclo[16.2.2.0^{6,11}]docosa-1(21),6(11),7,9,14,18(22),19-heptaene-3-carboxamide(Covalent)

C3E.1: 16 residues within 4Å: Chain A: Q.19, G.23, S.24, C.25, W.26, N.66, G.67, G.68, L.69, M.70, A.135, M.161, D.162, H.163, G.164, A.214 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.69, A:L.69 Hydrogen bonds: A:Q.19, A:C.25, A:G.68, A:G.68, A:D.162 Water bridges: A:C.22, A:H.163

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: N.18, Q.19, G.20, Q.21, W.189 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.18, A:G.20, A:Q.21 Water bridges: A:C.22 GOL.3: 5 residues within 4Å: Chain A: N.18, G.20, Y.91, E.92, A.93 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.18, A:Y.91

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Giroud, M. et al., Repurposing a Library of Human Cathepsin L Ligands: Identification of Macrocyclic Lactams as Potent Rhodesain and Trypanosoma brucei Inhibitors. J. Med. Chem. (2018)

Release Date

2018-04-11

Peptides

Cathepsin L1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cathepsin L1

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