SMTL ID : 6f1n.1

Estimation of relative drug-target residence times by random acceleration molecular dynamics simulation

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.09 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: E.75, H.77, N.79, T.219, F.221 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.79, A:N.79, A:T.219 Water bridges: A:T.219 Salt bridges: A:H.77

1 x C8W: 4-[5-[2-aminocarbonyl-3,6-bis(azanyl)-5-cyano-thieno[2,3-b]pyridin-4-yl]-2-methoxy-phenoxy]butanoic acid(Non-covalent)

C8W.2: 17 residues within 4Å: Chain A: L.48, N.51, S.52, A.55, K.58, D.93, I.96, G.97, M.98, N.106, L.107, G.108, T.109, G.135, F.138, Y.139, T.184 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:N.51, A:L.107, A:T.109, A:F.138 Hydrogen bonds: A:N.51, A:K.58, A:D.93, A:G.97, A:G.108, A:G.108 Water bridges: A:S.52, A:S.52, A:D.93, A:T.184, A:T.184 Salt bridges: A:K.58

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kokh, D.B. et al., Estimation of Drug-Target Residence Times by tau-Random Acceleration Molecular Dynamics Simulations. J Chem Theory Comput (2018)

Release Date

2018-05-30

Peptides

Heat shock protein HSP 90-alpha: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Heat shock protein HSP 90-alpha

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