SMTL ID : 6g2q.1

Ternary complex crystal structure of DNA polymerase Beta with a dideoxy terminated primer with CHCL (S-isomer), beta, gamma dTTP analogue

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.15 Å
Oligo State
monomer
Ligands
1 x DG- DT- DC- DG- DG: Downstream Primer Strand(Non-covalent)
3 x NA: SODIUM ION(Non-functional Binders)
1 x EJH: [(~{S})-chloranyl-[[[(2~{R},3~{S},5~{R})-5-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]methyl]phosphonic acid(Non-covalent)
1 x MG: MAGNESIUM ION(Non-covalent)
1 x CL: CHLORIDE ION(Non-functional Binders)
Links
RCSB   PDBe   PDBj   PDBsum   CATH   PLIP
Citation
Batra, V.K. et al., Mapping Functional Substrate-Enzyme Interactions in the pol beta Active Site through Chemical Biology: Structural Responses to Acidity Modification of Incoming dNTPs. Biochemistry (2018)
Release Date
2018-07-04
Peptides
DNA polymerase beta: C
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
C
A

DNA polymerase beta

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1bpx.1 | 1bpy.1 | 1bpz.1 | 1mq2.1 | 1mq3.1 | 1tv9.1 | 1tva.1 | 1zjm.1 | 1zjn.1 | 1zqa.1 | 1zqb.1 | 1zqc.1 | 1zqd.1 | 1zqe.1 | 1zqf.1 | 1zqg.1 | 1zqh.1 | 1zqi.1 | 1zqj.1 | 1zqk.1 | 1zql.1 | 1zqm.1 | 1zqn.1 | 1zqo.1 | 1zqp.1 | 1zqq.1 | 1zqr.1 | 1zqs.1 | 1zqt.1 | 2fmp.1  more...