SMTL ID : 6mid.2 (3 other biounits)

Cryo-EM structure of the ZIKV virion in complex with Fab fragments of the potently neutralizing human monoclonal antibody ZIKV-195

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-15-15-5-5-mer

Ligands

15 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG-NAG.1: 3 residues within 4Å: Chain A: G.150, N.154, T.156 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 3 residues within 4Å: Chain E: M.151, N.154, T.156 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 6 residues within 4Å: Chain C: G.150, M.151, N.154 Chain H: D.94, S.95, L.96 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 3 residues within 4Å: Chain I: G.150, N.154, T.156 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 3 residues within 4Å: Chain M: M.151, N.154, T.156 No protein-ligand interaction detected (PLIP) NAG-NAG.6: 6 residues within 4Å: Chain K: G.150, M.151, N.154 Chain P: D.94, S.95, L.96 No protein-ligand interaction detected (PLIP) NAG-NAG.7: 3 residues within 4Å: Chain Q: G.150, N.154, T.156 No protein-ligand interaction detected (PLIP) NAG-NAG.8: 3 residues within 4Å: Chain U: M.151, N.154, T.156 No protein-ligand interaction detected (PLIP) NAG-NAG.9: 6 residues within 4Å: Chain S: G.150, M.151, N.154 Chain X: D.94, S.95, L.96 No protein-ligand interaction detected (PLIP) NAG-NAG.10: 3 residues within 4Å: Chain Y: G.150, N.154, T.156 No protein-ligand interaction detected (PLIP) NAG-NAG.11: 3 residues within 4Å: Chain 2: M.151, N.154, T.156 No protein-ligand interaction detected (PLIP) NAG-NAG.12: 6 residues within 4Å: Chain 0: G.150, M.151, N.154 Chain 5: D.94, S.95, L.96 No protein-ligand interaction detected (PLIP) NAG-NAG.13: 3 residues within 4Å: Chain 6: G.150, N.154, T.156 No protein-ligand interaction detected (PLIP) NAG-NAG.14: 3 residues within 4Å: Chain a: M.151, N.154, T.156 No protein-ligand interaction detected (PLIP) NAG-NAG.15: 6 residues within 4Å: Chain 8: G.150, M.151, N.154 Chain d: D.94, S.95, L.96 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Long, F. et al., Structural basis of a potent human monoclonal antibody against Zika virus targeting a quaternary epitope. Proc. Natl. Acad. Sci. U.S.A. (2019)

Release Date

2019-01-16

Peptides

E protein: ACEIKMQSUY0268a
M protein: BDFJLNRTVZ1379b
monoclonal antibody ZIKV-195 heavy chain: GOW4c
monoclonal antibody ZIKV-195 light chain: HPX5d

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

I
A

K
C

M
E

Q
A

S
C

U
E

Y
A

0
C

2
E

6
A

8
C

a
E

B
B

D
D

F
F

J
B

L
D

N
F

R
B

T
D

V
F

Z
B

1
D

3
F

7
B

9
D

b
F

G
H

O
H

W
H

4
H

c
H

H
L

P
L

X
L

5
L

d
L

E protein

M protein

monoclonal antibody ZIKV-195 heavy chain

monoclonal antibody ZIKV-195 light chain

Related Entries With Identical Sequence