SMTL ID : 7bu8.3 (2 other biounits)

Cryo-EM structure of zika virus complexed with Fab SIgN-3C at pH 6.5

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-3-3-mer

Ligands

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 5 residues within 4Å: Chain A: Q.147, V.153, N.154, H.158 Chain K: R.112 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain K Hydrophobic interactions: A:V.153 Hydrogen bonds: A:H.158, K:R.112 NAG.2: 6 residues within 4Å: Chain B: G.150, M.151, N.154, T.156, G.157, E.159 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.154, B:E.159, B:E.159 NAG.3: 5 residues within 4Å: Chain D: S.149, G.150, V.153, N.154, H.158 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, S. et al., A Human Antibody Neutralizes Different Flaviviruses by Using Different Mechanisms. Cell Rep (2020)

Release Date

2020-05-13

Peptides

Genome polyprotein: ABD
Zika virus M protein: CEF
SIgN-3C Fab heavy chain: GIK
SIgN-3C Fab light chain: HJL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

D
B

C
D

E
E

F
F

G
G

I
H

K
J

H
I

J
L

L
K

Genome polyprotein

Zika virus M protein

SIgN-3C Fab heavy chain

SIgN-3C Fab light chain

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