SMTL ID : 7bua.3 (2 other biounits)

Cryo-EM structure of zika virus complexed with Fab SIgN-3C at pH 8.0

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-3-3-mer

Ligands

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 6 residues within 4Å: Chain A: S.149, G.150, M.151, V.153, N.154, H.158 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:M.151 Hydrogen bonds: A:N.154 NAG.2: 6 residues within 4Å: Chain B: S.149, G.150, M.151, V.153, N.154, H.158 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:M.151 Hydrogen bonds: B:N.154 NAG.3: 6 residues within 4Å: Chain D: S.149, G.150, M.151, V.153, N.154, H.158 2 PLIP interactions: 2 interactions with chain D Hydrophobic interactions: D:M.151 Hydrogen bonds: D:N.154

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, S. et al., A Human Antibody Neutralizes Different Flaviviruses by Using Different Mechanisms. Cell Rep (2020)

Release Date

2020-05-13

Peptides

Genome polyprotein: ABD
zika virus M protein: CEF
SIgN-3C Fab heavy chain: GIK
SIgN-3C Fab light chain: HJL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

D
B

C
D

E
E

F
F

G
G

I
H

K
J

H
I

J
L

L
K

Genome polyprotein

zika virus M protein

SIgN-3C Fab heavy chain

SIgN-3C Fab light chain

Related Entries With Identical Sequence