SMTL ID : 7bu8.2 (2 other biounits)

Cryo-EM structure of zika virus complexed with Fab SIgN-3C at pH 6.5

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-15-15-15-15-mer

Ligands

15 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 5 residues within 4Å: Chain A: Q.147, V.153, N.154, H.158 Chain K: R.112 Ligand excluded by PLIP NAG.2: 6 residues within 4Å: Chain B: G.150, M.151, N.154, T.156, G.157, E.159 Ligand excluded by PLIP NAG.3: 5 residues within 4Å: Chain D: S.149, G.150, V.153, N.154, H.158 Ligand excluded by PLIP NAG.4: 5 residues within 4Å: Chain M: Q.147, V.153, N.154, H.158 Chain W: R.112 Ligand excluded by PLIP NAG.5: 6 residues within 4Å: Chain N: G.150, M.151, N.154, T.156, G.157, E.159 Ligand excluded by PLIP NAG.6: 5 residues within 4Å: Chain P: S.149, G.150, V.153, N.154, H.158 Ligand excluded by PLIP NAG.7: 5 residues within 4Å: Chain 8: R.112 Chain Y: Q.147, V.153, N.154, H.158 Ligand excluded by PLIP NAG.8: 6 residues within 4Å: Chain Z: G.150, M.151, N.154, T.156, G.157, E.159 Ligand excluded by PLIP NAG.9: 5 residues within 4Å: Chain 1: S.149, G.150, V.153, N.154, H.158 Ligand excluded by PLIP NAG.10: 5 residues within 4Å: Chain a: Q.147, V.153, N.154, H.158 Chain k: R.112 Ligand excluded by PLIP NAG.11: 6 residues within 4Å: Chain b: G.150, M.151, N.154, T.156, G.157, E.159 Ligand excluded by PLIP NAG.12: 5 residues within 4Å: Chain d: S.149, G.150, V.153, N.154, H.158 Ligand excluded by PLIP NAG.13: 5 residues within 4Å: Chain m: Q.147, V.153, N.154, H.158 Chain w: R.112 Ligand excluded by PLIP NAG.14: 6 residues within 4Å: Chain n: G.150, M.151, N.154, T.156, G.157, E.159 Ligand excluded by PLIP NAG.15: 5 residues within 4Å: Chain p: S.149, G.150, V.153, N.154, H.158 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, S. et al., A Human Antibody Neutralizes Different Flaviviruses by Using Different Mechanisms. Cell Rep (2020)

Release Date

2020-05-13

Peptides

Genome polyprotein: ABDMNPYZ1abdmnp
Zika virus M protein: CEFOQR023cefoqr
SIgN-3C Fab heavy chain: GIKSUW468giksuw
SIgN-3C Fab light chain: HJLTVX579hjltvx

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

D
B

M
A

N
C

P
B

Y
A

Z
C

1
B

a
A

b
C

d
B

m
A

n
C

p
B

C
D

E
E

F
F

O
D

Q
E

R
F

0
D

2
E

3
F

c
D

e
E

f
F

o
D

q
E

r
F

G
G

I
H

K
J

S
G

U
H

W
J

4
G

6
H

8
J

g
G

i
H

k
J

s
G

u
H

w
J

H
I

J
L

L
K

T
I

V
L

X
K

5
I

7
L

9
K

h
I

j
L

l
K

t
I

v
L

x
K

Genome polyprotein

Zika virus M protein

SIgN-3C Fab heavy chain

SIgN-3C Fab light chain

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