SMTL ID : 7cbp.3 (3 other biounits)

CryoEM structure of Zika virus with Fab at 4.1 Angstrom

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-18-18-12-12-mer

Ligands

6 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain F: H.148, G.150, M.151, N.154, T.156 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 5 residues within 4Å: Chain P: H.148, G.150, M.151, N.154, T.156 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 5 residues within 4Å: Chain Z: H.148, G.150, M.151, N.154, T.156 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 5 residues within 4Å: Chain 9: H.148, G.150, M.151, N.154, T.156 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 5 residues within 4Å: Chain j: H.148, G.150, M.151, N.154, T.156 No protein-ligand interaction detected (PLIP) NAG-NAG.6: 5 residues within 4Å: Chain t: H.148, G.150, M.151, N.154, T.156 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tyagi, A. et al., A complex between the Zika virion and the Fab of a broadly cross-reactive neutralizing monoclonal antibody revealed by cryo-EM and single particle analysis at 4.1 angstrom resolution. J Struct Biol X (2020)

Release Date

2020-07-08

Peptides

Small envelope protein M: ABCKLMUVW456efgopq
Envelope protein E: DEFNOPXYZ789hijrst
Fab Heavy chain: GIQS02ackmuw
Fab light chain: HJRT13bdlnvx

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
T

B
U

C
V

K
T

L
U

M
V

U
T

V
U

W
V

4
T

5
U

6
V

e
T

f
U

g
V

o
T

p
U

q
V

D
Q

E
N

F
K

N
Q

O
N

P
K

X
Q

Y
N

Z
K

7
Q

8
N

9
K

h
Q

i
N

j
K

r
Q

s
N

t
K

G
D

I
R

Q
D

S
R

0
D

2
R

a
D

c
R

k
D

m
R

u
D

w
R

H
E

J
S

R
E

T
S

1
E

3
S

b
E

d
S

l
E

n
S

v
E

x
S

Small envelope protein M

Envelope protein E

Fab Heavy chain

Fab light chain

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