SMTL ID : 7kcr.2 (3 other biounits)

Cryo-EM structure of Zika virus in complex with E protein cross-linking human monoclonal antibody ADI30056

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-5-5-15-15-mer

Ligands

15 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG-NAG.1: 3 residues within 4Å: Chain C: M.151, N.154, T.156 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 3 residues within 4Å: Chain E: M.151, N.154, T.156 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 3 residues within 4Å: Chain G: M.151, N.154, T.156 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 3 residues within 4Å: Chain K: M.151, N.154, T.156 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 3 residues within 4Å: Chain M: M.151, N.154, T.156 No protein-ligand interaction detected (PLIP) NAG-NAG.6: 3 residues within 4Å: Chain O: M.151, N.154, T.156 No protein-ligand interaction detected (PLIP) NAG-NAG.7: 3 residues within 4Å: Chain S: M.151, N.154, T.156 No protein-ligand interaction detected (PLIP) NAG-NAG.8: 3 residues within 4Å: Chain U: M.151, N.154, T.156 No protein-ligand interaction detected (PLIP) NAG-NAG.9: 3 residues within 4Å: Chain W: M.151, N.154, T.156 No protein-ligand interaction detected (PLIP) NAG-NAG.10: 3 residues within 4Å: Chain 0: M.151, N.154, T.156 No protein-ligand interaction detected (PLIP) NAG-NAG.11: 3 residues within 4Å: Chain 2: M.151, N.154, T.156 No protein-ligand interaction detected (PLIP) NAG-NAG.12: 3 residues within 4Å: Chain 4: M.151, N.154, T.156 No protein-ligand interaction detected (PLIP) NAG-NAG.13: 3 residues within 4Å: Chain 8: M.151, N.154, T.156 No protein-ligand interaction detected (PLIP) NAG-NAG.14: 3 residues within 4Å: Chain a: M.151, N.154, T.156 No protein-ligand interaction detected (PLIP) NAG-NAG.15: 3 residues within 4Å: Chain c: M.151, N.154, T.156 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sevvana, M. et al., Structural Basis of Zika Virus Specific Neutralization in Subsequent Flavivirus Infections. Viruses (2020)

Release Date

2020-12-16

Peptides

ADI30056 Fab heavy chain variable region: AIQY6
ADI30056 Fab light chain variable region: BJRZ7
envelope protein E: CEGKMOSUW0248ac
membrane protein M: DFHLNPTVX1359bd

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

I
H

Q
H

Y
H

6
H

B
L

J
L

R
L

Z
L

7
L

C
A

E
C

G
E

K
A

M
C

O
E

S
A

U
C

W
E

0
A

2
C

4
E

8
A

a
C

c
E

D
B

F
D

H
F

L
B

N
D

P
F

T
B

V
D

X
F

1
B

3
D

5
F

9
B

b
D

d
F

ADI30056 Fab heavy chain variable region

ADI30056 Fab light chain variable region

envelope protein E

membrane protein M

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