SMTL ID : 6ojp.1

Structure of glycolipid alpha-GSA[8,6P] in complex with mouse CD1d

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.17 Å
Oligo State
hetero-1-1-mer
Ligands
6 x NAG: N-ACETYL-D-GLUCOSAMINE(Post Translational Modification)(Non-covalent)
2 x BMA: BETA-D-MANNOSE(Non-functional Binders)(Non-covalent)
4 x MAN: ALPHA-D-MANNOSE(Non-functional Binders)(Non-covalent)
1 x FUC: ALPHA-L-FUCOSE(Non-covalent)
1 x 7LP: (5R,6S,7S)-5,6-dihydroxy-7-(octanoylamino)-N-(6-phenylhexyl)-8-{[(2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2-yl]oxy}octanamide(Non-covalent)
1 x PLM: PALMITIC ACID(Non-covalent)
4 x GOL: GLYCEROL(Non-functional Binders)
1 x SO4: SULFATE ION(Non-functional Binders)
Links
RCSB   PDBe   PDBj   PDBsum   CATH   PLIP
Citation
Wang, J. et al., A molecular switch in mouse CD1d modulates natural killer T cell activation by alpha-galactosylsphingamides. J.Biol.Chem. (2019)
Release Date
2019-08-21
Peptides
Antigen-presenting glycoprotein CD1d1: A
Beta-2-microglobulin: B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B