SMTL ID : 6onj.1

Crystal structure of PPARgamma ligand binding domain in complex with TRAP220 peptide and agonist rosiglitazone

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-1-1-mer

Ligands

1 x BRL: 2,4-THIAZOLIDIINEDIONE, 5-[[4-[2-(METHYL-2-PYRIDINYLAMINO)ETHOXY]PHENYL]METHYL]-(9CL)(Non-covalent)

BRL.1: 17 residues within 4Å: Chain A: I.79, F.80, G.82, C.83, S.87, H.121, Y.125, L.128, V.137, I.139, M.146, F.161, M.162, H.247, L.251, L.267, Y.271 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:I.79 Hydrogen bonds: A:S.87, A:Y.271, A:Y.271 Water bridges: A:S.140

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shang, J. et al., A molecular switch regulating transcriptional repression and activation of PPAR gamma. Nat Commun (2020)

Release Date

2020-03-04

Peptides

Peroxisome proliferator-activated receptor gamma: A
Mediator of RNA polymerase II transcription subunit 1, TRAP220 Coactivator Peptide: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Peroxisome proliferator-activated receptor gamma

Mediator of RNA polymerase II transcription subunit 1, TRAP220 Coactivator Peptide

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