SMTL ID : 6s17.1

Crystal Structure of DYRK1A with small molecule inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.10 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: K.69, K.70 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.70 Salt bridges: A:K.69 SO4.2: 3 residues within 4Å: Chain A: K.140, R.176, S.177 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.177, A:S.177, A:S.177 Water bridges: A:A.178 Salt bridges: A:K.140, A:R.176 SO4.3: 4 residues within 4Å: Chain A: N.20, G.44, S.45, K.67 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.20 Salt bridges: A:K.67

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 4 residues within 4Å: Chain A: N.74, Q.75, I.78, Y.195 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.195, A:Y.195 Water bridges: A:Q.75, A:Q.75 EDO.5: 7 residues within 4Å: Chain A: K.341, T.342, R.343, I.344, Q.345, Y.348 Ligands: EDO.9 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.342, A:Q.345 EDO.6: 5 residues within 4Å: Chain A: P.213, Y.214, D.215, P.340, K.341 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.341 EDO.7: 8 residues within 4Å: Chain A: V.252, L.253, R.297, K.298, L.299, H.300, K.329, L.333 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.252, A:L.299, A:H.300 Water bridges: A:K.329 EDO.8: 3 residues within 4Å: Chain A: P.257, A.258, H.259 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.258, A:H.259 EDO.9: 2 residues within 4Å: Chain A: Y.348 Ligands: EDO.5 1 PLIP interactions: 1 interactions with chain A Water bridges: A:Y.348 EDO.10: 6 residues within 4Å: Chain A: M.116, L.117, S.118, C.172, N.173, P.174 2 PLIP interactions: 2 interactions with chain A Water bridges: A:M.116, A:C.172

1 x KQK: ~{N},~{N}-dimethyl-4-pyrazolo[1,5-b]pyridazin-3-yl-pyrimidin-2-amine(Non-covalent)

KQK.11: 15 residues within 4Å: Chain A: I.41, G.42, F.46, V.49, A.62, K.64, V.98, F.114, E.115, M.116, L.117, S.118, L.170, V.182, D.183 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.46, A:F.114 Hydrogen bonds: A:K.64, A:L.117, A:D.183 Water bridges: A:F.184

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sorrell, F.J. et al., Kinase Scaffold Repurposing in the Public Domain. To be published

Release Date

2019-06-26

Peptides

Dual specificity tyrosine-phosphorylation-regulated kinase 1A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Dual specificity tyrosine-phosphorylation-regulated kinase 1A

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