SMTL ID : 6s1h.1

Crystal Structure of DYRK1A with small molecule inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.05 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: K.69, K.70 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.70 Salt bridges: A:K.69 SO4.2: 4 residues within 4Å: Chain A: R.201, R.204, N.241, E.242 5 PLIP interactions: 5 interactions with chain A Water bridges: A:R.201, A:A.240, A:E.242 Salt bridges: A:R.201, A:R.204 SO4.3: 3 residues within 4Å: Chain A: K.140, R.176, S.177 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.177, A:S.177, A:S.177 Water bridges: A:A.178 Salt bridges: A:K.140, A:R.176

1 x KQZ: ~{N},~{N}-dimethyl-4-(1~{H}-pyrrolo[2,3-b]pyridin-3-yl)pyrimidin-2-amine(Non-covalent)

KQZ.4: 16 residues within 4Å: Chain A: I.41, F.46, V.49, A.62, K.64, E.79, V.98, F.114, E.115, M.116, L.117, N.168, L.170, V.182, D.183 Ligands: EDO.6 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.49, A:F.114, A:L.170, A:V.182 Hydrogen bonds: A:K.64, A:E.115, A:L.117, A:D.183

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 6 residues within 4Å: Chain A: A.71, N.74, Q.75, I.78, G.185, Y.195 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.195 Water bridges: A:Q.75, A:Q.75, A:Y.195 EDO.6: 9 residues within 4Å: Chain A: I.41, G.42, K.43, F.46, V.49, N.120, E.167, L.170 Ligands: KQZ.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.43, A:N.120 EDO.7: 2 residues within 4Å: Chain A: L.150, Y.347 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sorrell, F.J. et al., Kinase Scaffold Repurposing in the Public Domain. To be published

Release Date

2019-06-26

Peptides

Dual specificity tyrosine-phosphorylation-regulated kinase 1A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Dual specificity tyrosine-phosphorylation-regulated kinase 1A

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