SMTL ID : 6s1j.1

Crystal Structure of DYRK1A with small molecule inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.41 Å

Oligo State

monomer

Ligands

1 x KRK: 3-[2-[(3~{S})-3-fluoranylpyrrolidin-1-yl]pyrimidin-4-yl]pyrazolo[1,5-b]pyridazine(Non-covalent)

KRK.1: 15 residues within 4Å: Chain A: I.41, G.42, F.46, V.49, A.62, K.64, V.98, F.114, E.115, M.116, L.117, S.118, L.170, V.182, D.183 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.46, A:F.114, A:V.182 Hydrogen bonds: A:K.64, A:L.117, A:D.183 Water bridges: A:F.184

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: A.71, N.74, Q.75, I.78, G.185, Y.195 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.195 Water bridges: A:Q.75 EDO.3: 6 residues within 4Å: Chain A: K.341, T.342, R.343, I.344, Q.345, Y.348 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.342, A:Q.345 EDO.4: 3 residues within 4Å: Chain A: P.257, A.258, H.259 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.258, A:H.259, A:H.259 EDO.5: 8 residues within 4Å: Chain A: V.252, L.253, R.297, K.298, L.299, H.300, K.329, L.333 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.252, A:L.299, A:H.300 EDO.7: 6 residues within 4Å: Chain A: M.212, H.259, I.260, D.339, P.340, K.341 2 PLIP interactions: 2 interactions with chain A Water bridges: A:D.339, A:D.339 EDO.8: 3 residues within 4Å: Chain A: Y.119, D.123, N.127 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.127 Water bridges: A:D.123, A:N.127

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.6: 6 residues within 4Å: Chain A: N.241, E.242, V.243, D.244, K.269 Ligands: SO4.11 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.269

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.9: 1 residues within 4Å: Chain A: S.45 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.45 Water bridges: A:S.45 SO4.10: 4 residues within 4Å: Chain A: N.20, G.44, S.45, K.67 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.20, A:G.44 Salt bridges: A:K.67 SO4.11: 5 residues within 4Å: Chain A: R.201, R.204, N.241, E.242 Ligands: DMS.6 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.201, A:A.240 Salt bridges: A:R.201, A:R.204 SO4.12: 3 residues within 4Å: Chain A: K.140, R.176, S.177 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.177, A:S.177 Water bridges: A:A.178 Salt bridges: A:K.140, A:R.176

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sorrell, F.J. et al., Kinase Scaffold Repurposing in the Public Domain. To be published

Release Date

2019-06-26

Peptides

Dual specificity tyrosine-phosphorylation-regulated kinase 1A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Dual specificity tyrosine-phosphorylation-regulated kinase 1A

Related Entries With Identical Sequence