SMTL ID : 6sfk.1

Crystal structure of p38 alpha in complex with compound 81 (MCP42)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 2 residues within 4Å: Chain A: L.223, V.274 3 PLIP interactions: 3 interactions with chain A Water bridges: A:T.219, A:T.219, A:R.221 EDO.2: 5 residues within 4Å: Chain A: D.295, K.296, R.297, I.298, Q.302 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.297, A:Q.302 EDO.3: 6 residues within 4Å: Chain A: Q.129, N.279, L.281, A.307, Y.308, Q.311 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.129, A:N.279 Water bridges: A:Q.311 EDO.4: 3 residues within 4Å: Chain A: L.223, L.239, V.274 No protein-ligand interaction detected (PLIP)

1 x LB8: ~{N}-[5-[[(2~{S})-1-azanyl-4-cyclohexyl-1-oxidanylidene-butan-2-yl]carbamoyl]-2-methyl-phenyl]-1-phenyl-5-(trifluoromethyl)pyrazole-4-carboxamide(Non-covalent)

LB8.5: 19 residues within 4Å: Chain A: V.31, V.39, A.52, K.54, E.72, L.75, L.76, I.85, L.105, T.107, H.108, L.109, M.110, A.112, H.149, I.167, L.168, D.169, F.170 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:A.52, A:K.54, A:K.54, A:L.75, A:L.76, A:L.76, A:T.107, A:L.109, A:L.168 Hydrogen bonds: A:K.54, A:E.72, A:E.72, A:T.107, A:T.107, A:M.110, A:D.169, A:D.169

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rohm, S. et al., Fast Iterative Synthetic Approach toward Identification of Novel Highly Selective p38 MAP Kinase Inhibitors. J.Med.Chem. (2019)

Release Date

2019-09-11

Peptides

Mitogen-activated protein kinase 14: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitogen-activated protein kinase 14

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