- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.74 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x FDA: DIHYDROFLAVINE-ADENINE DINUCLEOTIDE(Non-covalent)
- 2 x T2C: (2S)-1,3-thiazolidine-2-carboxylic acid(Non-covalent)
T2C.2: 8 residues within 4Å:- Chain A: K.267, D.308, L.451, Y.475, Y.487, R.490, R.491
- Ligands: FDA.1
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:K.267, A:K.267
- Salt bridges: A:K.267, A:R.490, A:R.491
T2C.11: 7 residues within 4Å:- Chain B: K.267, D.308, R.369, Y.475, R.490, R.491
- Ligands: FDA.10
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:K.267, B:K.267
- Water bridges: B:Y.375
- Salt bridges: B:K.267, B:R.490, B:R.491
- 2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
NAD.3: 28 residues within 4Å:- Chain A: I.705, S.706, P.707, W.708, N.709, I.714, K.732, A.734, E.735, D.764, G.765, G.768, A.769, F.782, T.783, G.784, S.785, V.788, I.792, E.812, T.813, G.814, C.846, E.942, F.944, L.972, F.1012, S.1018
12 PLIP interactions:12 interactions with chain A- Hydrophobic interactions: A:I.714, A:T.783
- Hydrogen bonds: A:S.706, A:W.708, A:K.732, A:E.735, A:S.785, A:T.813, A:E.942
- Water bridges: A:T.786, A:L.791, A:T.813
NAD.12: 21 residues within 4Å:- Chain B: I.705, S.706, P.707, W.708, K.732, P.733, A.734, D.764, G.765, G.768, A.769, F.782, T.783, G.784, S.785, V.788, L.791, I.792, T.813, E.942, F.944
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:S.706, B:W.708, B:K.732, B:S.785, B:E.942
- 2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 6 x SO4: SULFATE ION(Non-functional Binders)
SO4.5: 8 residues within 4Å:- Chain A: R.690, P.1041, Q.1042
- Chain B: S.96, Q.98, E.99, A.169, R.172
8 PLIP interactions:2 interactions with chain A, 6 interactions with chain B- Hydrogen bonds: A:Q.1042, B:S.96
- Salt bridges: A:R.690, B:R.172
- Water bridges: B:S.96, B:S.97, B:R.172, B:R.172
SO4.6: 4 residues within 4Å:- Chain A: R.71, S.511, I.512, D.513
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:I.512, A:D.513
- Salt bridges: A:R.71
SO4.7: 3 residues within 4Å:- Chain A: S.1196, G.1198, R.1202
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:S.1196
- Salt bridges: A:R.1202
SO4.8: 5 residues within 4Å:- Chain A: Q.855, E.856, D.857, R.954, R.955
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:Q.855, A:D.857, A:R.955
- Water bridges: A:D.956
- Salt bridges: A:R.954
SO4.14: 8 residues within 4Å:- Chain A: S.96, Q.98, E.99, A.169, R.172
- Chain B: R.690, P.1041, Q.1042
12 PLIP interactions:7 interactions with chain A, 5 interactions with chain B- Hydrogen bonds: A:S.96, A:S.96, B:Q.1042
- Water bridges: A:S.97, A:S.165, A:S.165, A:R.172, B:R.690, B:R.690, B:Q.1042
- Salt bridges: A:R.172, B:R.690
SO4.15: 4 residues within 4Å:- Chain B: S.1196, G.1198, E.1199, R.1202
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:S.1196, B:G.1198, B:E.1199
- Salt bridges: B:R.1202
- 2 x FMT: FORMIC ACID(Non-functional Binders)
FMT.9: 4 residues within 4Å:- Chain A: R.42, L.388, A.389, D.554
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:A.389
- Water bridges: A:R.42, A:D.554, A:N.557, A:T.560
FMT.16: 4 residues within 4Å:- Chain B: R.42, L.388, A.389, D.554
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:A.389
- Water bridges: B:D.554, B:D.554, B:N.557, B:T.560
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Campbell, A.C. et al., Covalent Modification of the Flavin in Proline Dehydrogenase by Thiazolidine-2-Carboxylate. Acs Chem.Biol. (2020)
- Release Date
- 2020-03-18
- Peptides
- Bifunctional protein PutA: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.74 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x FDA: DIHYDROFLAVINE-ADENINE DINUCLEOTIDE(Non-covalent)
- 2 x T2C: (2S)-1,3-thiazolidine-2-carboxylic acid(Non-covalent)
- 2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- 2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 6 x SO4: SULFATE ION(Non-functional Binders)
- 2 x FMT: FORMIC ACID(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Campbell, A.C. et al., Covalent Modification of the Flavin in Proline Dehydrogenase by Thiazolidine-2-Carboxylate. Acs Chem.Biol. (2020)
- Release Date
- 2020-03-18
- Peptides
- Bifunctional protein PutA: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B