- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.54 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 2 x HYP: 4-HYDROXYPROLINE(Non-covalent)
HYP.2: 8 residues within 4Å:- Chain A: E.676, F.710, I.714, R.845, S.847, G.1004, A.1005, F.1012
8 PLIP interactions:6 interactions with chain A, 2 Ligand-Ligand interactions- Hydrophobic interactions: A:F.710
- Hydrogen bonds: A:S.847, A:G.1004, A:A.1005, A:A.1005, P.2, P.2
- Salt bridges: A:R.845
HYP.12: 9 residues within 4Å:- Chain B: E.676, F.710, I.714, R.845, S.847, I.1003, G.1004, A.1005, F.1012
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:F.710
- Hydrogen bonds: B:S.847, B:G.1004, B:A.1005, B:A.1005
- Salt bridges: B:R.845
- 2 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
PGE.3: 6 residues within 4Å:- Chain A: L.1080, G.1081, L.1082, D.1083, L.1098, H.1099
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:D.1083
PGE.13: 5 residues within 4Å:- Chain B: L.1080, G.1081, D.1083, L.1098, H.1099
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:D.1083
- 1 x FMT: FORMIC ACID(Non-functional Binders)
- 2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
NAD.5: 31 residues within 4Å:- Chain A: I.705, S.706, P.707, W.708, N.709, F.710, I.714, K.732, P.733, A.734, E.735, D.764, G.765, G.768, A.769, F.782, T.783, G.784, S.785, V.788, I.792, E.812, T.813, G.814, C.846, E.942, F.944, L.972, F.1012, S.1018
- Ligands: MG.10
19 PLIP interactions:19 interactions with chain A- Hydrophobic interactions: A:P.707, A:F.710, A:I.714, A:T.783
- Hydrogen bonds: A:S.706, A:S.706, A:W.708, A:K.732, A:E.735, A:S.785, A:T.813, A:E.942
- Water bridges: A:E.736, A:E.736, A:E.736, A:S.785, A:S.785, A:T.786, A:T.813
NAD.15: 32 residues within 4Å:- Chain B: I.705, S.706, P.707, W.708, N.709, F.710, I.714, K.732, P.733, A.734, E.735, D.764, G.765, G.768, A.769, F.782, T.783, G.784, S.785, V.788, L.791, I.792, E.812, T.813, G.814, C.846, E.942, F.944, L.972, F.1012, S.1018
- Ligands: MG.18
17 PLIP interactions:17 interactions with chain B- Hydrophobic interactions: B:P.707, B:F.710, B:I.714, B:T.783
- Hydrogen bonds: B:S.706, B:S.706, B:W.708, B:K.732, B:E.735, B:S.785, B:T.813, B:E.942
- Water bridges: B:E.736, B:T.786, B:Q.795, B:T.813, B:E.942
- 6 x SO4: SULFATE ION(Non-functional Binders)
SO4.6: 8 residues within 4Å:- Chain A: R.690, P.1041, Q.1042
- Chain B: S.96, Q.98, E.99, A.169, R.172
10 PLIP interactions:6 interactions with chain B, 4 interactions with chain A- Hydrogen bonds: B:S.96, A:Q.1042
- Water bridges: B:S.96, B:S.97, B:R.172, B:R.172, A:R.690, A:R.690
- Salt bridges: B:R.172, A:R.690
SO4.7: 4 residues within 4Å:- Chain A: R.71, S.511, I.512, D.513
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:I.512, A:D.513
- Salt bridges: A:R.71
SO4.8: 3 residues within 4Å:- Chain A: S.1196, G.1198, R.1202
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:S.1196, A:G.1198, A:E.1199
- Salt bridges: A:R.1202
SO4.9: 6 residues within 4Å:- Chain A: S.139, Q.855, E.856, D.857, R.954, R.955
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:S.139, A:Q.855, A:D.857, A:R.955
- Salt bridges: A:R.954
SO4.16: 8 residues within 4Å:- Chain A: S.96, Q.98, E.99, A.169, R.172
- Chain B: R.690, P.1041, Q.1042
12 PLIP interactions:7 interactions with chain A, 5 interactions with chain B- Hydrogen bonds: A:S.96, A:S.96, B:Q.1042
- Water bridges: A:S.97, A:S.165, A:S.165, A:R.172, B:R.690, B:R.690, B:Q.1042
- Salt bridges: A:R.172, B:R.690
SO4.17: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)- 2 x MG: MAGNESIUM ION(Non-functional Binders)
- 1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Campbell, A.C. et al., Structural analysis of prolines and hydroxyprolines binding to the l-glutamate-gamma-semialdehyde dehydrogenase active site of bifunctional proline utilization A. Arch.Biochem.Biophys. (2020)
- Release Date
- 2020-12-30
- Peptides
- Bifunctional protein PutA: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.54 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 2 x HYP: 4-HYDROXYPROLINE(Non-covalent)
- 2 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- 1 x FMT: FORMIC ACID(Non-functional Binders)
- 2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- 6 x SO4: SULFATE ION(Non-functional Binders)
- 2 x MG: MAGNESIUM ION(Non-functional Binders)
- 1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Campbell, A.C. et al., Structural analysis of prolines and hydroxyprolines binding to the l-glutamate-gamma-semialdehyde dehydrogenase active site of bifunctional proline utilization A. Arch.Biochem.Biophys. (2020)
- Release Date
- 2020-12-30
- Peptides
- Bifunctional protein PutA: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B