- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.56 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 9 x SO4: SULFATE ION(Non-functional Binders)
SO4.2: 8 residues within 4Å:- Chain A: R.690, P.1041, Q.1042
- Chain B: S.96, Q.98, E.99, A.169, R.172
10 PLIP interactions:6 interactions with chain B, 4 interactions with chain A- Hydrogen bonds: B:S.96, A:Q.1042
- Water bridges: B:S.96, B:Q.98, B:R.172, B:R.172, A:R.690, A:R.690
- Salt bridges: B:R.172, A:R.690
SO4.3: 4 residues within 4Å:- Chain A: R.71, S.511, I.512, D.513
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:I.512, A:D.513
- Salt bridges: A:R.71
SO4.4: 3 residues within 4Å:- Chain A: S.1196, G.1198, R.1202
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:S.1196, A:G.1198, A:E.1199
- Salt bridges: A:R.1202
SO4.5: 6 residues within 4Å:- Chain A: S.139, Q.855, E.856, D.857, R.954, R.955
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:Q.855, A:D.857, A:R.955
- Water bridges: A:R.954, A:D.956
- Salt bridges: A:R.954
SO4.6: 5 residues within 4Å:- Chain A: L.157, T.158, S.159, R.1093, A.1229
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:S.159, A:S.159
- Water bridges: A:L.157, A:R.1093, A:A.1229, A:A.1229
- Salt bridges: A:R.1093
SO4.11: 8 residues within 4Å:- Chain A: S.96, Q.98, E.99, A.169, R.172
- Chain B: R.690, P.1041, Q.1042
12 PLIP interactions:5 interactions with chain B, 7 interactions with chain A- Hydrogen bonds: B:Q.1042, A:S.96, A:S.96
- Water bridges: B:R.690, B:Q.1042, B:Q.1042, A:S.97, A:S.165, A:S.165, A:R.172
- Salt bridges: B:R.690, A:R.172
SO4.12: 4 residues within 4Å:- Chain B: R.71, S.511, I.512, D.513
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:I.512, B:D.513
- Salt bridges: B:R.71
SO4.13: 1 residues within 4Å:- Chain B: R.204
1 PLIP interactions:1 interactions with chain B- Salt bridges: B:R.204
SO4.14: 5 residues within 4Å:- Chain B: L.157, T.158, S.159, R.1093, A.1229
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:S.159
- Water bridges: B:T.160, B:T.1222, B:A.1229
- Salt bridges: B:R.1093
- 3 x DPR: D-PROLINE(Non-covalent)
DPR.7: 9 residues within 4Å:- Chain A: E.676, F.710, I.714, R.845, S.847, I.1003, G.1004, A.1005, F.1012
9 PLIP interactions:9 interactions with chain A- Hydrophobic interactions: A:A.1005, A:F.1012, A:F.1012
- Hydrogen bonds: A:E.676, A:S.847, A:G.1004, A:A.1005
- Water bridges: A:S.847
- Salt bridges: A:R.845
DPR.8: 4 residues within 4Å:- Chain A: K.575, W.576, T.577, R.746
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:T.577, A:E.743
- Water bridges: A:K.575, A:T.577, A:R.746, A:R.746
- Salt bridges: A:R.746
DPR.15: 9 residues within 4Å:- Chain B: E.676, F.710, I.714, R.845, S.847, I.1003, G.1004, A.1005, F.1012
9 PLIP interactions:9 interactions with chain B- Hydrophobic interactions: B:A.1005, B:F.1012, B:F.1012
- Hydrogen bonds: B:E.676, B:S.847, B:G.1004, B:A.1005
- Water bridges: B:S.847
- Salt bridges: B:R.845
- 2 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Campbell, A.C. et al., Structural analysis of prolines and hydroxyprolines binding to the l-glutamate-gamma-semialdehyde dehydrogenase active site of bifunctional proline utilization A. Arch.Biochem.Biophys. (2020)
- Release Date
- 2020-12-30
- Peptides
- Bifunctional protein PutA: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.56 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 9 x SO4: SULFATE ION(Non-functional Binders)
- 3 x DPR: D-PROLINE(Non-covalent)
- 2 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Campbell, A.C. et al., Structural analysis of prolines and hydroxyprolines binding to the l-glutamate-gamma-semialdehyde dehydrogenase active site of bifunctional proline utilization A. Arch.Biochem.Biophys. (2020)
- Release Date
- 2020-12-30
- Peptides
- Bifunctional protein PutA: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B