- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.52 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x UJM: (2S)-thiolane-2-carboxylic acid(Non-covalent)
- 2 x UJP: (2R)-thiolane-2-carboxylic acid(Non-covalent)
UJP.2: 9 residues within 4Å:- Chain A: K.267, D.308, A.374, Y.475, Y.487, R.490, R.491
- Ligands: UJM.1, FAD.4
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:Y.475
- Salt bridges: A:K.267, A:R.490, A:R.491
UJP.11: 7 residues within 4Å:- Chain B: K.267, D.308, A.374, Y.475, R.490
- Ligands: UJM.10, FAD.13
2 PLIP interactions:2 interactions with chain B- Salt bridges: B:K.267, B:R.490
- 2 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
FAD.4: 35 residues within 4Å:- Chain A: D.308, A.309, V.340, Q.342, Y.344, R.369, V.371, K.372, G.373, A.374, Y.375, W.376, F.394, T.395, R.396, K.397, T.400, D.401, A.423, T.424, H.425, N.426, Q.449, C.450, L.451, Y.475, R.491, E.494, S.499, S.500, F.501, I.1234, G.1235
- Ligands: UJM.1, UJP.2
30 PLIP interactions:30 interactions with chain A- Hydrophobic interactions: A:A.423, A:Q.449, A:L.451, A:L.451, A:Y.475
- Hydrogen bonds: A:A.309, A:A.309, A:Q.342, A:R.369, A:K.372, A:G.373, A:G.373, A:G.373, A:A.374, A:T.395, A:T.400, A:D.401, A:T.424, A:H.425, A:H.425, A:N.426, A:E.494, A:S.499, A:F.501
- Water bridges: A:V.502
- Salt bridges: A:K.372, A:K.372, A:K.397
- pi-Stacking: A:W.376, A:W.376
FAD.13: 33 residues within 4Å:- Chain B: D.308, A.309, V.340, Q.342, Y.344, R.369, V.371, K.372, G.373, A.374, Y.375, W.376, F.394, T.395, R.396, K.397, T.400, D.401, A.423, T.424, H.425, N.426, Q.449, C.450, L.451, Y.475, E.494, S.499, S.500, F.501, I.1234
- Ligands: UJM.10, UJP.11
30 PLIP interactions:30 interactions with chain B- Hydrophobic interactions: B:A.423, B:Q.449, B:L.451, B:L.451, B:Y.475
- Hydrogen bonds: B:A.309, B:A.309, B:Q.342, B:R.369, B:K.372, B:G.373, B:G.373, B:G.373, B:A.374, B:T.395, B:D.401, B:H.425, B:N.426, B:E.494, B:E.494, B:S.499, B:F.501
- Water bridges: B:K.397, B:V.502
- Salt bridges: B:K.372, B:K.372, B:K.397
- pi-Stacking: B:W.376, B:W.376, B:W.376
- 2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
NAD.5: 30 residues within 4Å:- Chain A: I.705, S.706, P.707, W.708, N.709, F.710, I.714, K.732, P.733, A.734, E.735, D.764, G.765, G.768, A.769, F.782, T.783, G.784, S.785, V.788, L.791, I.792, E.812, T.813, G.814, C.846, E.942, F.944, F.1012
- Ligands: MG.9
19 PLIP interactions:19 interactions with chain A- Hydrophobic interactions: A:P.707, A:F.710, A:I.714, A:T.783
- Hydrogen bonds: A:S.706, A:S.706, A:W.708, A:K.732, A:E.735, A:S.785, A:T.813, A:E.942
- Water bridges: A:E.736, A:S.785, A:S.785, A:T.786, A:Q.795, A:T.813, A:E.942
NAD.14: 31 residues within 4Å:- Chain B: I.705, S.706, P.707, W.708, N.709, F.710, I.714, K.732, P.733, A.734, E.735, D.764, G.765, G.768, A.769, F.782, T.783, G.784, S.785, V.788, L.791, I.792, E.812, T.813, G.814, C.846, E.942, F.944, F.1012, S.1018
- Ligands: MG.16
20 PLIP interactions:20 interactions with chain B- Hydrophobic interactions: B:F.710, B:I.714, B:T.783
- Hydrogen bonds: B:S.706, B:S.706, B:W.708, B:K.732, B:E.735, B:S.785, B:T.813, B:E.942
- Water bridges: B:E.735, B:E.735, B:E.736, B:E.736, B:G.765, B:T.786, B:Q.795, B:T.813, B:E.942
- 4 x SO4: SULFATE ION(Non-functional Binders)
SO4.6: 8 residues within 4Å:- Chain A: R.690, P.1041, Q.1042
- Chain B: S.96, Q.98, E.99, A.169, R.172
11 PLIP interactions:6 interactions with chain B, 5 interactions with chain A- Hydrogen bonds: B:S.96, A:Q.1042
- Water bridges: B:S.96, B:S.97, B:R.172, B:R.172, A:R.690, A:R.690, A:Q.1042
- Salt bridges: B:R.172, A:R.690
SO4.7: 3 residues within 4Å:- Chain A: S.1196, G.1198, R.1202
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:S.1196, A:G.1198
- Salt bridges: A:R.1202
SO4.8: 2 residues within 4Å:- Chain A: K.1062, K.1141
3 PLIP interactions:3 interactions with chain A- Water bridges: A:K.1062, A:A.1138
- Salt bridges: A:K.1062
SO4.15: 8 residues within 4Å:- Chain A: S.96, Q.98, E.99, A.169, R.172
- Chain B: R.690, P.1041, Q.1042
13 PLIP interactions:7 interactions with chain A, 6 interactions with chain B- Hydrogen bonds: A:S.96, A:S.96, B:Q.1042
- Water bridges: A:S.97, A:S.165, A:S.165, A:R.172, B:R.690, B:R.690, B:Q.1042, B:Q.1042
- Salt bridges: A:R.172, B:R.690
- 2 x MG: MAGNESIUM ION(Non-functional Binders)
- 1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Campbell, A.C. et al., Photoinduced Covalent Irreversible Inactivation of Proline Dehydrogenase by S-Heterocycles. Acs Chem.Biol. (2021)
- Release Date
- 2021-09-29
- Peptides
- Bifunctional protein PutA: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.52 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x UJM: (2S)-thiolane-2-carboxylic acid(Non-covalent)
- 2 x UJP: (2R)-thiolane-2-carboxylic acid(Non-covalent)
- 2 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- 4 x SO4: SULFATE ION(Non-functional Binders)
- 2 x MG: MAGNESIUM ION(Non-functional Binders)
- 1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Campbell, A.C. et al., Photoinduced Covalent Irreversible Inactivation of Proline Dehydrogenase by S-Heterocycles. Acs Chem.Biol. (2021)
- Release Date
- 2021-09-29
- Peptides
- Bifunctional protein PutA: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B