- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.44 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)
- 1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 1 x FMT: FORMIC ACID(Non-functional Binders)
- 2 x FDA: DIHYDROFLAVINE-ADENINE DINUCLEOTIDE(Non-covalent)
FDA.4: 30 residues within 4Å:- Chain A: D.308, A.309, V.340, Q.342, Y.344, R.369, V.371, K.372, G.373, A.374, Y.375, W.376, F.394, T.395, R.396, K.397, T.400, A.423, T.424, H.425, N.426, Q.449, C.450, L.451, Y.475, E.494, N.495, S.499, S.500, F.501
30 PLIP interactions:30 interactions with chain A- Hydrophobic interactions: A:A.423, A:Q.449, A:Y.475, A:Y.475
- Hydrogen bonds: A:A.309, A:A.309, A:Q.342, A:R.369, A:K.372, A:G.373, A:G.373, A:G.373, A:A.374, A:T.395, A:T.400, A:D.401, A:T.424, A:H.425, A:H.425, A:N.426, A:E.494, A:S.499, A:F.501
- Water bridges: A:K.397, A:V.502
- Salt bridges: A:K.372, A:K.372, A:K.397
- pi-Stacking: A:W.376, A:W.376
FDA.13: 30 residues within 4Å:- Chain B: D.308, A.309, V.340, Q.342, Y.344, R.369, V.371, K.372, G.373, A.374, Y.375, W.376, F.394, T.395, R.396, K.397, T.400, A.423, T.424, H.425, N.426, Q.449, C.450, L.451, Y.475, E.494, N.495, S.499, S.500, F.501
29 PLIP interactions:29 interactions with chain B- Hydrophobic interactions: B:A.423, B:Q.449, B:Y.475, B:Y.475
- Hydrogen bonds: B:A.309, B:A.309, B:Q.342, B:R.369, B:K.372, B:G.373, B:G.373, B:G.373, B:A.374, B:T.395, B:D.401, B:H.425, B:N.426, B:E.494, B:S.499, B:F.501
- Water bridges: B:K.397, B:A.423, B:E.494, B:V.502
- Salt bridges: B:K.372, B:K.372, B:K.397
- pi-Stacking: B:W.376, B:W.376
- 5 x SO4: SULFATE ION(Non-functional Binders)
SO4.5: 8 residues within 4Å:- Chain A: R.690, P.1041, Q.1042
- Chain B: S.96, Q.98, E.99, A.169, R.172
11 PLIP interactions:5 interactions with chain A, 6 interactions with chain B- Hydrogen bonds: A:Q.1042, B:S.96
- Water bridges: A:R.690, A:R.690, A:Q.1042, B:S.96, B:S.97, B:R.172, B:R.172
- Salt bridges: A:R.690, B:R.172
SO4.6: 3 residues within 4Å:- Chain A: S.1196, G.1198, R.1202
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:S.1196, A:G.1198
- Salt bridges: A:R.1202
SO4.7: 5 residues within 4Å:- Chain A: Q.855, E.856, D.857, R.954, R.955
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:Q.855, A:D.857, A:R.955
- Water bridges: A:D.956
SO4.14: 8 residues within 4Å:- Chain A: S.96, Q.98, E.99, A.169, R.172
- Chain B: R.690, P.1041, Q.1042
11 PLIP interactions:4 interactions with chain B, 7 interactions with chain A- Hydrogen bonds: B:Q.1042, A:S.96, A:S.96
- Water bridges: B:R.690, B:Q.1042, A:S.97, A:S.165, A:S.165, A:R.172
- Salt bridges: B:R.690, A:R.172
SO4.15: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)- 2 x MG: MAGNESIUM ION(Non-functional Binders)
- 3 x PRO: PROLINE(Non-covalent)
PRO.9: 10 residues within 4Å:- Chain A: E.676, F.710, I.714, R.845, C.846, S.847, I.1003, G.1004, A.1005, F.1012
10 PLIP interactions:6 interactions with chain A, 4 Ligand-Ligand interactions- Hydrophobic interactions: A:F.710, A:I.714
- Hydrogen bonds: A:S.847, A:G.1004, A:A.1005, P.9, P.9, P.9, P.9
- Salt bridges: A:R.845
PRO.10: 2 residues within 4Å:- Chain A: R.360, R.361
2 PLIP interactions:1 interactions with chain A, 1 Ligand-Ligand interactions- Hydrogen bonds: A:R.361, P.10
PRO.17: 10 residues within 4Å:- Chain B: E.676, F.710, I.714, R.845, C.846, S.847, I.1003, G.1004, A.1005, F.1012
9 PLIP interactions:7 interactions with chain B, 2 Ligand-Ligand interactions- Hydrophobic interactions: B:F.710, B:I.714, B:F.1012
- Hydrogen bonds: B:S.847, B:G.1004, B:A.1005, P.17, P.17
- Salt bridges: B:R.845
- 1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Campbell, A.C. et al., Structural analysis of prolines and hydroxyprolines binding to the l-glutamate-gamma-semialdehyde dehydrogenase active site of bifunctional proline utilization A. Arch.Biochem.Biophys. (2020)
- Release Date
- 2020-12-30
- Peptides
- Bifunctional protein PutA: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.44 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)
- 1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 1 x FMT: FORMIC ACID(Non-functional Binders)
- 2 x FDA: DIHYDROFLAVINE-ADENINE DINUCLEOTIDE(Non-covalent)
- 5 x SO4: SULFATE ION(Non-functional Binders)
- 2 x MG: MAGNESIUM ION(Non-functional Binders)
- 3 x PRO: PROLINE(Non-covalent)
- 1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Campbell, A.C. et al., Structural analysis of prolines and hydroxyprolines binding to the l-glutamate-gamma-semialdehyde dehydrogenase active site of bifunctional proline utilization A. Arch.Biochem.Biophys. (2020)
- Release Date
- 2020-12-30
- Peptides
- Bifunctional protein PutA: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B