- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.41 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 1 x FMT: FORMIC ACID(Non-functional Binders)
- 3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.3: 5 residues within 4Å:- Chain A: G.544, D.545, R.547, T.548, R.689
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:G.544, A:T.548, A:T.548
PEG.6: 5 residues within 4Å:- Chain A: L.1080, G.1081, L.1082, L.1098, H.1099
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:D.1083
PEG.14: 5 residues within 4Å:- Chain B: G.544, D.545, R.547, T.548, R.689
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:G.544
- Water bridges: B:T.548, B:R.689, B:R.689
- 3 x UY7: (4S)-4-hydroxy-D-proline(Non-covalent)
UY7.4: 9 residues within 4Å:- Chain A: E.676, F.710, I.714, R.845, S.847, I.1003, G.1004, A.1005, F.1012
9 PLIP interactions:9 interactions with chain A- Hydrophobic interactions: A:F.1012
- Hydrogen bonds: A:S.847, A:G.1004, A:A.1005
- Water bridges: A:E.676, A:R.845, A:S.847, A:S.847
- Salt bridges: A:R.845
UY7.5: 4 residues within 4Å:- Chain A: K.575, W.576, T.577, R.746
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:T.577
- Water bridges: A:T.577, A:R.651, A:R.651, A:R.651, A:R.746
- Salt bridges: A:R.746
UY7.15: 9 residues within 4Å:- Chain B: E.676, F.710, I.714, R.845, S.847, I.1003, G.1004, A.1005, F.1012
7 PLIP interactions:7 interactions with chain B- Hydrophobic interactions: B:F.1012
- Hydrogen bonds: B:S.847, B:G.1004, B:A.1005
- Water bridges: B:E.676, B:S.847
- Salt bridges: B:R.845
- 9 x SO4: SULFATE ION(Non-functional Binders)
SO4.7: 8 residues within 4Å:- Chain A: R.690, P.1041, Q.1042
- Chain B: S.96, Q.98, E.99, A.169, R.172
11 PLIP interactions:6 interactions with chain B, 5 interactions with chain A- Hydrogen bonds: B:S.96, A:Q.1042
- Water bridges: B:S.96, B:S.97, B:R.172, B:R.172, A:R.690, A:R.690, A:Q.1042
- Salt bridges: B:R.172, A:R.690
SO4.8: 4 residues within 4Å:- Chain A: S.1196, G.1198, E.1199, R.1202
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:S.1196, A:E.1199
- Water bridges: A:E.1199
- Salt bridges: A:R.1202
SO4.9: 4 residues within 4Å:- Chain A: R.71, S.511, I.512, D.513
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:I.512, A:D.513
- Salt bridges: A:R.71
SO4.10: 6 residues within 4Å:- Chain A: S.139, Q.855, E.856, D.857, R.954, R.955
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:Q.855, A:D.857, A:R.955
- Water bridges: A:D.956
- Salt bridges: A:R.954
SO4.11: 5 residues within 4Å:- Chain A: L.157, T.158, S.159, R.1093, A.1229
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:S.159, A:S.159
- Water bridges: A:L.157, A:R.1093, A:A.1229, A:A.1229
- Salt bridges: A:R.1093
SO4.16: 8 residues within 4Å:- Chain A: S.96, Q.98, E.99, A.169, R.172
- Chain B: R.690, P.1041, Q.1042
12 PLIP interactions:7 interactions with chain A, 5 interactions with chain B- Hydrogen bonds: A:S.96, A:S.96, B:Q.1042
- Water bridges: A:S.97, A:S.165, A:S.165, A:R.172, B:R.690, B:Q.1042, B:Q.1042
- Salt bridges: A:R.172, B:R.690
SO4.17: 1 residues within 4Å:- Chain B: R.204
2 PLIP interactions:2 interactions with chain B- Water bridges: B:R.204
- Salt bridges: B:R.204
SO4.18: 4 residues within 4Å:- Chain B: R.71, S.511, I.512, D.513
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:I.512, B:D.513
- Salt bridges: B:R.71
SO4.19: 5 residues within 4Å:- Chain B: Q.855, E.856, D.857, R.954, R.955
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:Q.855, B:D.857, B:R.955
- Water bridges: B:D.956
- Salt bridges: B:R.954
- 1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Campbell, A.C. et al., Structural analysis of prolines and hydroxyprolines binding to the l-glutamate-gamma-semialdehyde dehydrogenase active site of bifunctional proline utilization A. Arch.Biochem.Biophys. (2020)
- Release Date
- 2020-12-30
- Peptides
- Bifunctional protein PutA: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.41 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 1 x FMT: FORMIC ACID(Non-functional Binders)
- 3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 3 x UY7: (4S)-4-hydroxy-D-proline(Non-covalent)
- 9 x SO4: SULFATE ION(Non-functional Binders)
- 1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Campbell, A.C. et al., Structural analysis of prolines and hydroxyprolines binding to the l-glutamate-gamma-semialdehyde dehydrogenase active site of bifunctional proline utilization A. Arch.Biochem.Biophys. (2020)
- Release Date
- 2020-12-30
- Peptides
- Bifunctional protein PutA: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B