SMTL ID : 6usv.1

Crystal structure of GluN1/GluN2A ligand-binding domain in complex with glycine and SDZ 220-040

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GLY: GLYCINE(Non-covalent)

GLY.1: 10 residues within 4Å: Chain A: F.92, P.124, L.125, T.126, R.131, S.179, S.180, W.223, D.224, F.250 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:P.124, A:T.126, A:T.126, A:S.180, A:S.180 Salt bridges: A:R.131

1 x QGP: (2S)-2-amino-3-[2',4'-dichloro-4-hydroxy-5-(phosphonomethyl)biphenyl-3-yl]propanoic acid(Non-covalent)

QGP.2: 16 residues within 4Å: Chain B: E.13, A.14, F.16, H.85, S.111, L.112, T.113, R.118, G.169, S.170, T.171, Y.211, D.212, V.215, Y.242 Ligands: GOL.3 19 PLIP interactions: 19 interactions with chain B Hydrophobic interactions: B:E.13, B:V.215 Hydrogen bonds: B:S.111, B:S.111, B:T.113, B:T.113, B:S.170, B:T.171, B:T.171, B:Y.211 Water bridges: B:V.166, B:G.169, B:S.170, B:S.170, B:E.172, B:Y.242 Salt bridges: B:H.85, B:R.118 Halogen bonds: B:Y.242

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 4 residues within 4Å: Chain B: E.13, K.84, H.85 Ligands: QGP.2 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.13, B:K.84

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chou, T.H. et al., Structural Basis of Functional Transitions in Mammalian NMDA Receptors. Cell (2020)

Release Date

2020-07-15

Peptides

Glutamate receptor ionotropic, NMDA 1: A
Glutamate receptor ionotropic, NMDA 2A: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glutamate receptor ionotropic, NMDA 1

Glutamate receptor ionotropic, NMDA 2A

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