SMTL ID : 6v7y.1

Human CD1d presenting alpha-Galactosylceramide in complex with VHH nanobody 1D5

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.40 Å
Oligo State
hetero-1-1-1-mer
Ligands
1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
5 x SO4: SULFATE ION(Non-functional Binders)
1 x AGH: N-{(1S,2R,3S)-1-[(ALPHA-D-GALACTOPYRANOSYLOXY)METHYL]-2,3-DIHYDROXYHEPTADECYL}HEXACOSANAMIDE(Non-covalent)
5 x CL: CHLORIDE ION(Non-functional Binders)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Shahine, A. et al., A single-domain bispecific antibody targeting CD1d and the NKT T-cell receptor induces a potent antitumor response. Nat Cancer (2020)
Release Date
2020-09-16
Peptides
Antigen-presenting glycoprotein CD1d: A
Beta-2-microglobulin: B
Nanobody VHH ID5: C
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
C
F

Antigen-presenting glycoprotein CD1d

Beta-2-microglobulin

Nanobody VHH ID5

Related Entries With Identical Sequence

1a9b.1 | 1a9b.2 | 1a9e.1 | 1b0g.1 | 1b0g.2 | 1b0r.1 | 1bd2.1 | 1cg9.1 | 1duy.1 | 1duy.2 | 1duz.1 | 1duz.2 | 1eey.1 | 1eey.2 | 1eez.1 | 1eez.2 | 1efx.1 | 1gzp.1 | 1gzq.1 | 1hhg.1 | 1hhg.2 | 1hhh.1 | 1hhi.1 | 1hhi.2 | 1hhj.1 | 1hhj.2 | 1hhk.1 | 1hhk.2 | 1i1f.1 | 1i1f.2  more...