SMTL ID : 8sos.1

Human CD1d presenting sphingomyelin C24:1 in complex with VHH nanobody 1D17

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.33 Å
Oligo State
hetero-2-2-2-mer
Ligands
2 x FO4: sphingomyelin(Non-covalent)
4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Lameris, R. et al., Enhanced CD1d phosphatidylserine presentation using a single-domain antibody promotes immunomodulatory CD1d-TIM-3 interactions. J Immunother Cancer (2023)
Release Date
2023-12-13
Peptides
Antigen-presenting glycoprotein CD1d: AD
Beta-2-microglobulin: BE
Nanobody VHH ID17: CF
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
D
E
B
B
E
F
C
D
F
G

Antigen-presenting glycoprotein CD1d

Beta-2-microglobulin

Toggle Identical (BE)

Nanobody VHH ID17

Toggle Identical (CF)

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1a9b.1 | 1a9b.2 | 1a9e.1 | 1b0g.1 | 1b0g.2 | 1b0r.1 | 1bd2.1 | 1cg9.1 | 1duy.1 | 1duy.2 | 1duz.1 | 1duz.2 | 1eey.1 | 1eey.2 | 1eez.1 | 1eez.2 | 1efx.1 | 1gzp.1 | 1gzq.1 | 1hhg.1 | 1hhg.2 | 1hhh.1 | 1hhi.1 | 1hhi.2 | 1hhj.1 | 1hhj.2 | 1hhk.1 | 1hhk.2 | 1i1f.1 | 1i1f.2  more...