SMTL ID : 6z51.1

Crystal structure of CLK3 in complex with macrocycle ODS2002941

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.92 Å

Oligo State

monomer

Ligands

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 2 residues within 4Å: Chain A: K.279, K.281 4 PLIP interactions: 4 interactions with chain A Water bridges: A:K.279, A:K.279 Salt bridges: A:K.279, A:K.281

17 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: L.288, V.289, W.290, E.292 Ligand excluded by PLIP EDO.3: 7 residues within 4Å: Chain A: E.254, R.256, E.257, W.290, D.291, S.294, G.297 Ligand excluded by PLIP EDO.4: 3 residues within 4Å: Chain A: F.247, T.248, Q.251 Ligand excluded by PLIP EDO.5: 4 residues within 4Å: Chain A: E.205, H.206, H.207 Ligands: EDO.6 Ligand excluded by PLIP EDO.6: 4 residues within 4Å: Chain A: H.207, G.226, W.227 Ligands: EDO.5 Ligand excluded by PLIP EDO.7: 3 residues within 4Å: Chain A: W.227, A.228, P.333 Ligand excluded by PLIP EDO.8: 2 residues within 4Å: Chain A: E.302, N.303 Ligand excluded by PLIP EDO.9: 4 residues within 4Å: Chain A: D.323, R.326, R.327, E.330 Ligand excluded by PLIP EDO.10: 3 residues within 4Å: Chain A: S.294, S.295, D.296 Ligand excluded by PLIP EDO.11: 6 residues within 4Å: Chain A: L.20, V.21, C.22, R.23, D.26, F.104 Ligand excluded by PLIP EDO.12: 5 residues within 4Å: Chain A: H.138, N.189, T.190, E.355, T.360 Ligand excluded by PLIP EDO.13: 3 residues within 4Å: Chain A: H.206, T.208, T.209 Ligand excluded by PLIP EDO.14: 7 residues within 4Å: Chain A: F.241, F.247, T.248, L.249, I.265, C.304, Y.310 Ligand excluded by PLIP EDO.15: 5 residues within 4Å: Chain A: E.263, K.264, I.265, G.267, P.306 Ligand excluded by PLIP EDO.16: 3 residues within 4Å: Chain A: P.270, S.271, H.272 Ligand excluded by PLIP EDO.17: 3 residues within 4Å: Chain A: L.266, K.308, R.326 Ligand excluded by PLIP EDO.18: 4 residues within 4Å: Chain A: Q.320, D.323, H.345, P.346 Ligand excluded by PLIP

1 x Q8B: N-cyclopentyl-2-[(11,15-dimethyl-10-oxo-8-oxa-2,11,15,19,21,23-hexazatetracyclo[15.6.1.13,7.020,24]pentacosa-1(23),3(25),4,6,17,20(24),21-heptaen-6-yl)oxy]acetamide(Non-covalent)

Q8B.19: 18 residues within 4Å: Chain A: N.37, L.38, G.39, E.40, F.43, V.46, A.60, V.96, F.112, E.113, L.114, L.115, N.118, E.121, E.163, N.164, L.166, D.196 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.166 Hydrogen bonds: A:E.40, A:E.113, A:L.115, A:N.118 Water bridges: A:N.118, A:E.121, A:E.121

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chaikuad, A. et al., Crystal structure of CLK3 in complex with macrocycle ODS2002941. To Be Published

Release Date

2020-06-03

Peptides

Dual specificity protein kinase CLK3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Dual specificity protein kinase CLK3

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