SMTL ID : 7az0.1

Structure of the mouse 8-oxoguanine DNA Glycosylase mOGG1 in complex with TH12161

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-trimer

Ligands

2 x SDW: 2-cyclopropyl-~{N}-(4-iodophenyl)quinazolin-4-amine(Non-covalent)

SDW.1: 15 residues within 4Å: Chain A: S.34, G.35, F.38, S.140, N.143, I.148, K.242, L.249, M.250, P.259, D.261, G.305, Q.308, A.309, F.312 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.38, A:I.148, A:K.242, A:P.259, A:F.312 Hydrogen bonds: A:G.35, A:K.242 pi-Stacking: A:F.312 Halogen bonds: A:G.305 SDW.3: 15 residues within 4Å: Chain B: S.34, G.35, F.38, S.140, N.143, N.144, I.148, K.242, L.249, M.250, P.259, D.261, G.305, A.309, F.312 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:F.38, B:F.38, B:I.148, B:K.242, B:P.259, B:F.312 Hydrogen bonds: B:G.35 pi-Stacking: B:F.312 Halogen bonds: B:G.305

1 x NI: NICKEL (II) ION(Non-covalent)

NI.2: 6 residues within 4Å: Chain A: H.269, H.275 Chain B: H.269, H.275 Chain C: H.269, H.275 6 PLIP interactions: 2 interactions with chain C, 2 interactions with chain B, 2 interactions with chain A Metal complexes: C:H.269, C:H.275, B:H.269, B:H.275, A:H.269, A:H.275

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Michel, M. et al., Small-molecule activation of OGG1 increases oxidative DNA damage repair by gaining a new function. Science (2022)

Release Date

2022-06-01

Peptides

N-glycosylase/DNA lyase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

B
BBB

C
CCC

N-glycosylase/DNA lyase

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