SMTL ID : 7hlt.1

PanDDA analysis group deposition -- Crystal Structure of TRIM21 in complex with Z328695024

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.15 Å

Oligo State

monomer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: W.21, M.33, F.171, N.172, Y.173 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.172, A:N.172 EDO.4: 4 residues within 4Å: Chain A: S.92, L.93 Ligands: K1G.2, K1G.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.93 EDO.5: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

2 x K1G: N,1-dimethyl-N-(propan-2-yl)-1H-pyrazolo[3,4-d]pyrimidin-4-amine(Non-covalent)

K1G.2: 7 residues within 4Å: Chain A: Y.50, M.52, D.77, F.91, N.168 Ligands: K1G.3, EDO.4 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:Y.50 K1G.3: 7 residues within 4Å: Chain A: W.76, D.77, W.103, W.105, N.168 Ligands: K1G.2, EDO.4 1 PLIP interactions: 1 interactions with chain A Water bridges: A:N.168

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.6: 3 residues within 4Å: Chain A: F.91, S.92, N.97 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.92, A:N.97

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y. et al., PanDDA analysis group deposition. To Be Published

Release Date

2024-11-27

Peptides

E3 ubiquitin-protein ligase TRIM21: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

E3 ubiquitin-protein ligase TRIM21

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