SMTL ID : 7hmg.1

PanDDA analysis group deposition -- Crystal Structure of TRIM21 in complex with Z274575916

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.32 Å

Oligo State

monomer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: W.21, M.33, F.171, N.172, Y.173 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.172, A:N.172 EDO.3: 6 residues within 4Å: Chain A: A.75, W.105, N.168, G.170, F.171 Ligands: WKS.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.168, A:F.171 EDO.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

1 x WKS: 2,4-dimethyl-6-(piperazin-1-yl)pyrimidine(Non-covalent)

WKS.2: 8 residues within 4Å: Chain A: W.76, D.77, L.93, W.103, L.104, W.105, N.168 Ligands: EDO.3 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.93, A:W.103 Hydrogen bonds: A:N.168 pi-Stacking: A:W.103

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 3 residues within 4Å: Chain A: F.91, S.92, N.97 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.92, A:N.97 Water bridges: A:S.92

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y. et al., PanDDA analysis group deposition. To Be Published

Release Date

2024-11-27

Peptides

E3 ubiquitin-protein ligase TRIM21: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

E3 ubiquitin-protein ligase TRIM21

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