SMTL ID : 7hmx.1

PanDDA analysis group deposition -- Crystal Structure of TRIM21 in complex with Z763030030

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.57 Å

Oligo State

monomer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: M.33, F.171, N.172, Y.173 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.172, A:N.172 EDO.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

1 x WJA: N-methyl-1-(5-methyl-1,2-oxazol-3-yl)methanesulfonamide(Non-covalent)

WJA.2: 8 residues within 4Å: Chain A: P.95, E.96, W.100, F.154, S.155, E.156, C.157, V.158 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:P.95 Hydrogen bonds: A:V.158

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 3 residues within 4Å: Chain A: F.91, S.92, N.97 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.92, A:N.97 Water bridges: A:S.92

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y. et al., PanDDA analysis group deposition. To Be Published

Release Date

2024-11-27

Peptides

E3 ubiquitin-protein ligase TRIM21: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

E3 ubiquitin-protein ligase TRIM21

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